C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: T cell receptor alpha variable 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000076758 Trav1 10090 + 14:52427928-52428876 TR_V_gene
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103567 Trav1-001 52427928-52428874 TR_V_gene
  ENSMUST00000185651 Trav1-201 52427967-52428876 TR_V_gene

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLiverLungTestisENSMUST00000103567ENSMUST00000185651
Transcript ID Bladder Breast Kidney Liver Lung Testis
ENSMUST00000103567 N/A 0.561±0.12 0.290±0.03 N/A 0.165±0.02 N/A
ENSMUST00000185651 0.105±0.00 0.387±0.15 0.065±0.00 0.080±0.00 N/A 0.187±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CX CIL_0008CX_0002 VISTA 14:52247406-52849170
CIL_0003NS CIL_0003NS_0002 CGP 14:52409889-52451402

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000255569 TRAV1-1 T cell receptor alpha variable 1-1 TR_V_gene Homo_sapiens
ENSG00000256553 TRAV1-2 T cell receptor alpha variable 1-2 TR_V_gene Homo_sapiens

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