C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 4833418N02 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000085287 4833418N02Rik 10090 - 17:87274886-87282814 lincRNA
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000137539 4833418N02Rik-001 87274886-87281693 lincRNA
  ENSMUST00000146560 4833418N02Rik-002 87274921-87282814 lincRNA
  ENSMUST00000160917 4833418N02Rik-004 87275247-87282500 lincRNA
  ENSMUST00000161759 4833418N02Rik-003 87280258-87282779 lincRNA

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000137539ENSMUST00000146560ENSMUST00000160917ENSMUST00000161759
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000137539 0.441±0.00 N/A 0.402±0.35 N/A N/A 0.248±0.00 0.419±0.12 0.681±0.00 0.480±0.05 0.311±0.00 0.263±0.11 1.997±0.00
ENSMUST00000146560 N/A 1.925±0.56 0.252±0.00 0.749±0.38 1.061±0.21 0.678±0.18 0.674±0.41 0.529±0.10 0.742±0.00 1.416±0.55 0.352±0.10 N/A
ENSMUST00000160917 N/A N/A 0.422±0.00 N/A N/A N/A 0.717±0.00 N/A N/A 1.238±0.00 N/A 4.276±0.00
ENSMUST00000161759 N/A 1.027±0.38 1.431±0.00 0.941±0.17 1.023±0.53 0.717±0.23 0.788±0.37 1.296±0.10 1.077±0.12 1.813±0.24 0.319±0.18 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D2 CIL_0008D2_0002 VISTA 17:87075116-87678515
CIL_0003T5 CIL_0003T5_0003 CGP 17:87254658-87381769

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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