C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 8430419K02 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000085743 8430419K02Rik 10090 - 11:18845851-18874309 processed_transcript
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000128654 8430419K02Rik-001 18845851-18872155 lincRNA
  ENSMUST00000133948 8430419K02Rik-003 18854043-18874309 processed_transcript
  ENSMUST00000156831 8430419K02Rik-002 18853939-18860115 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000128654ENSMUST00000133948ENSMUST00000156831
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000128654 0.171±0.10 0.313±0.13 1.070±0.15 0.104±0.00 N/A 0.075±0.00 0.023±0.00 0.060±0.02 0.026±0.02 0.082±0.05 0.017±0.00 0.413±0.30 0.039±0.00 0.050±0.00
ENSMUST00000133948 0.108±0.00 N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 0.144±0.04 N/A 0.434±0.15 N/A N/A
ENSMUST00000156831 N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JR CIL_0007JR_0004 UCNEbase 11:17198316-19679637
CIL_0007XO CIL_0007XO_0002 VISTA 11:18304266-18905268
CIL_00094L CIL_00094L_0002 VISTA 11:18449398-19050623
CIL_000949 CIL_000949_0002 VISTA 11:18616164-19218730
CIL_0008VO CIL_0008VO_0002 VISTA 11:18629400-19230770

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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