C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: predicted gene 4450
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000090817 Gm4450 10090 - 3:98445675-98457073 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000167753 Gm4450-001 98445675-98457073 protein_coding
  ENSMUST00000186215 Gm4450-002 98445675-98456595 nonsense_mediated_decay
  ENSMUST00000186494 Gm4450-006 98450506-98456972 protein_coding
  ENSMUST00000187082 Gm4450-004 98446567-98457047 protein_coding
  ENSMUST00000187850 Gm4450-003 98447198-98448976 retained_intron
  ENSMUST00000188356 Gm4450-007 98446572-98457043 protein_coding
  ENSMUST00000188407 Gm4450-005 98456033-98457046 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167753ENSMUST00000186215ENSMUST00000187850
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167753 N/A N/A N/A N/A N/A N/A N/A 24.063±4.29 N/A N/A N/A N/A N/A N/A
ENSMUST00000186215 N/A N/A N/A N/A N/A N/A N/A 24.420±2.11 N/A N/A N/A N/A N/A N/A
ENSMUST00000187850 1.757±0.52 1.371±0.48 2.130±0.31 5.671±3.13 1.997±0.54 1.575±0.13 1.242±0.14 13.108±2.83 1.462±0.45 2.650±0.87 2.270±0.37 2.301±0.93 1.588±0.77 4.093±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IA CIL_0005IA_0006 CGP 3:98445675-98509967

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003854 IEA 3-beta-hydroxy-delta5-steroid dehydrogenase activity
GO:0005575 ND cellular_component
GO:0006694 IEA steroid biosynthetic process
GO:0008150 ND biological_process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019747 hsd3b2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein_coding Danio_rerio
ENSDARG00000069926 hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein_coding Danio_rerio
ENSG00000203857 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein_coding Homo_sapiens
ENSG00000203859 HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein_coding Homo_sapiens

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