C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinal degeneration 3-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000091402 Rd3l 10090 - 12:111979111-111981317 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000170525 Rd3l-004 111979189-111980469 protein_coding
  ENSMUST00000185354 Rd3l-002 111979191-111981102 protein_coding
  ENSMUST00000189759 Rd3l-001 111979111-111981317 protein_coding
  ENSMUST00000190536 Rd3l-003 111979145-111981054 protein_coding
  ENSMUST00000190680 Rd3l-005 111979112-111980143 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverLungOvaryTestisENSMUST00000170525ENSMUST00000185354ENSMUST00000189759ENSMUST00000190536ENSMUST00000190680
Transcript ID Brain Colon Heart Liver Lung Ovary Testis
ENSMUST00000170525 N/A N/A N/A 0.016±0.00 N/A 0.048±0.01 0.085±0.02
ENSMUST00000185354 N/A N/A N/A N/A N/A N/A 0.041±0.02
ENSMUST00000189759 N/A 0.102±0.00 N/A 0.008±0.00 0.027±0.00 N/A 0.031±0.00
ENSMUST00000190536 0.195±0.00 N/A 0.025±0.00 0.020±0.00 N/A N/A 0.059±0.00
ENSMUST00000190680 N/A 0.097±0.00 N/A 0.032±0.00 N/A 0.221±0.03 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006X8 CIL_0006X8_0002 CGP 12:111961376-112068854
CIL_0006X7 CIL_0006X7_0002 CGP 12:111971559-112068854
CIL_0006X6 CIL_0006X6_0002 CGP 12:111979111-112127573

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091135 RD3L retinal degeneration 3-like protein_coding Danio_rerio
ENSG00000227729 RD3L retinal degeneration 3-like protein_coding Homo_sapiens

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