C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000UZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139618-ENSG00000139597 CGP 9606 13:32315474-32428178
GeneTranscriptPositionBiotype
ENSG00000139618 (BRCA2)
breast cancer 2, early onset 		ENST00000380152 (BRCA2-001) 32315474-32400266 protein_coding
ENST00000470094 (BRCA2-002) 32379840-32398272 nonsense_mediated_decay
ENST00000528762 (BRCA2-005) 32370971-32379495 nonsense_mediated_decay
ENST00000530893 (BRCA2-003) 32315505-32333291 processed_transcript
ENST00000533776 (BRCA2-006) 32396809-32398448 retained_intron
ENST00000544455 (BRCA2-201) 32315480-32399668 protein_coding
ENST00000614259 (BRCA2-004) 32316461-32362659 processed_transcript
ENSG00000212293 (SNORA16)
Small nucleolar RNA SNORA16B/SNORA16A family 		ENST00000390991 (SNORA16.1-202) 32420390-32420516 snoRNA
ENSG00000215515 (IFIT1P1)
interferon-induced protein with tetratricopeptide repeats 1 pseudogene 1 		ENST00000400497 (IFIT1P1-001) 32384660-32386108 processed_pseudogene
CIL_0000UZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041147-ENSMUSG00000041132 CGP 10090 5:150522630-150594525
GeneTranscriptPositionBiotype
ENSMUSG00000041132 (N4bp2l1)
NEDD4 binding protein 2-like 1 		ENSMUST00000016279 (N4bp2l1-201) 150571643-150594525 protein_coding
ENSMUSG00000041147 (Brca2)
breast cancer 2 		ENSMUST00000044620 (Brca2-201) 150522630-150569746 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000UZ_0001ENSG00000139618ENST00000380152ENST00000470094ENST00000528762ENST00000530893ENST00000533776ENST00000544455ENST00000614259ENSG00000212293ENST00000390991ENSG00000215515ENST00000400497CIL_0000UZ_0002ENSMUSG00000041132ENSMUST00000016279ENSMUSG00000041147ENSMUST00000044620
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000UZ_0001ENSG00000139618ENST00000380152ENST00000470094ENST00000528762ENST00000530893ENST00000533776ENST00000544455ENST00000614259ENSG00000212293ENST00000390991ENSG00000215515ENST00000400497CIL_0000UZ_0002ENSMUSG00000041132ENSMUST00000016279ENSMUSG00000041147ENSMUST00000044620
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139618 ENST00000380152 0.081±0.00 N/A N/A N/A 0.331±0.25 0.249±0.21 0.014±0.01 N/A 0.013±0.00 N/A N/A 0.762±0.87 0.163±0.13 0.531±0.23
ENST00000470094 N/A N/A N/A N/A N/A N/A 0.093±0.00 N/A 0.131±0.00 N/A N/A N/A N/A N/A
ENST00000528762 N/A N/A N/A 0.487±0.00 N/A N/A N/A N/A 0.179±0.00 N/A N/A 11.161±0.00 2.459±0.00 6.320±0.00
ENST00000530893 N/A N/A 0.164±0.00 N/A N/A 0.475±0.00 N/A 0.305±0.00 0.085±0.00 N/A N/A N/A N/A N/A
ENST00000533776 N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000544455 N/A N/A 0.037±0.00 N/A N/A N/A N/A 0.058±0.04 0.043±0.00 N/A N/A 1.145±0.00 N/A 0.479±0.00
ENST00000614259 N/A N/A N/A 0.017±0.00 0.145±0.00 0.198±0.00 N/A N/A 0.095±0.00 N/A 0.020±0.00 2.196±0.00 N/A N/A
ENSG00000212293 ENST00000390991 N/A N/A N/A 2.187±0.00 17.178±16.86 17.286±16.55 N/A N/A 0.539±0.00 0.549±0.00 N/A 10.380±0.00 N/A 1.059±0.34
ENSG00000215515 ENST00000400497 0.008±0.00 0.149±0.00 N/A 0.039±0.00 0.096±0.07 0.059±0.00 N/A N/A N/A 0.093±0.00 N/A 0.165±0.11 N/A 0.135±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041132 ENSMUST00000016279 5.871±2.18 11.782±1.90 6.729±1.00 3.862±1.04 9.198±4.05 1.463±0.45 0.500±0.10 2.524±0.35 9.260±5.72 3.504±0.63 0.648±0.60 4.310±1.23 1.243±0.73 2.980±0.86
ENSMUSG00000041147 ENSMUST00000044620 0.249±0.11 0.431±0.11 0.202±0.08 1.050±0.53 0.116±0.05 0.243±0.07 0.119±0.03 0.144±0.06 0.865±0.85 0.161±0.07 0.060±0.03 0.940±0.46 0.781±0.48 1.263±0.22

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