C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000V0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000189167-ENSG00000139618 CGP 9606 13:32303700-32400266
GeneTranscriptPositionBiotype
ENSG00000139618 (BRCA2)
breast cancer 2, early onset 		ENST00000380152 (BRCA2-001) 32315474-32400266 protein_coding
ENST00000470094 (BRCA2-002) 32379840-32398272 nonsense_mediated_decay
ENST00000528762 (BRCA2-005) 32370971-32379495 nonsense_mediated_decay
ENST00000530893 (BRCA2-003) 32315505-32333291 processed_transcript
ENST00000533776 (BRCA2-006) 32396809-32398448 retained_intron
ENST00000544455 (BRCA2-201) 32315480-32399668 protein_coding
ENST00000614259 (BRCA2-004) 32316461-32362659 processed_transcript
ENSG00000189167 (ZAR1L)
zygote arrest 1-like 		ENST00000345108 (ZAR1L-201) 32303771-32311954 protein_coding
ENST00000533490 (ZAR1L-001) 32303700-32315344 protein_coding
ENSG00000215515 (IFIT1P1)
interferon-induced protein with tetratricopeptide repeats 1 pseudogene 1 		ENST00000400497 (IFIT1P1-001) 32384660-32386108 processed_pseudogene
CIL_0000V0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056586-ENSMUSG00000041147 CGP 10090 5:150507055-150569746
GeneTranscriptPositionBiotype
ENSMUSG00000041147 (Brca2)
breast cancer 2 		ENSMUST00000044620 (Brca2-201) 150522630-150569746 protein_coding
ENSMUSG00000056586 (Zar1l)
zygote arrest 1-like 		ENSMUST00000118769 (Zar1l-001) 150507055-150518164 protein_coding
ENSMUSG00000082104 (Gm15933)
predicted gene 15933 		ENSMUST00000117215 (Gm15933-001) 150509694-150511338 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000V0_0001ENSG00000139618ENST00000380152ENST00000470094ENST00000528762ENST00000530893ENST00000533776ENST00000544455ENST00000614259ENSG00000189167ENST00000345108ENST00000533490ENSG00000215515ENST00000400497CIL_0000V0_0002ENSMUSG00000041147ENSMUST00000044620ENSMUSG00000056586ENSMUST00000118769ENSMUSG00000082104ENSMUST00000117215
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000V0_0001ENSG00000139618ENST00000380152ENST00000470094ENST00000528762ENST00000530893ENST00000533776ENST00000544455ENST00000614259ENSG00000189167ENST00000345108ENST00000533490ENSG00000215515ENST00000400497CIL_0000V0_0002ENSMUSG00000041147ENSMUST00000044620ENSMUSG00000056586ENSMUST00000118769ENSMUSG00000082104ENSMUST00000117215
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139618 ENST00000380152 0.081±0.00 N/A N/A N/A 0.331±0.25 0.249±0.21 0.014±0.01 N/A 0.013±0.00 N/A N/A 0.762±0.87 0.163±0.13 0.531±0.23
ENST00000470094 N/A N/A N/A N/A N/A N/A 0.093±0.00 N/A 0.131±0.00 N/A N/A N/A N/A N/A
ENST00000528762 N/A N/A N/A 0.487±0.00 N/A N/A N/A N/A 0.179±0.00 N/A N/A 11.161±0.00 2.459±0.00 6.320±0.00
ENST00000530893 N/A N/A 0.164±0.00 N/A N/A 0.475±0.00 N/A 0.305±0.00 0.085±0.00 N/A N/A N/A N/A N/A
ENST00000533776 N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000544455 N/A N/A 0.037±0.00 N/A N/A N/A N/A 0.058±0.04 0.043±0.00 N/A N/A 1.145±0.00 N/A 0.479±0.00
ENST00000614259 N/A N/A N/A 0.017±0.00 0.145±0.00 0.198±0.00 N/A N/A 0.095±0.00 N/A 0.020±0.00 2.196±0.00 N/A N/A
ENSG00000189167 ENST00000345108 N/A N/A N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A 0.066±0.02 0.081±0.00 0.321±0.08
ENST00000533490 N/A N/A N/A 0.062±0.00 N/A N/A 0.022±0.00 N/A N/A N/A N/A 0.039±0.00 N/A 0.280±0.12
ENSG00000215515 ENST00000400497 0.008±0.00 0.149±0.00 N/A 0.039±0.00 0.096±0.07 0.059±0.00 N/A N/A N/A 0.093±0.00 N/A 0.165±0.11 N/A 0.135±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041147 ENSMUST00000044620 0.249±0.11 0.431±0.11 0.202±0.08 1.050±0.53 0.116±0.05 0.243±0.07 0.119±0.03 0.144±0.06 0.865±0.85 0.161±0.07 0.060±0.03 0.940±0.46 0.781±0.48 1.263±0.22
ENSMUSG00000056586 ENSMUST00000118769 N/A N/A N/A 0.238±0.32 N/A N/A N/A N/A N/A N/A N/A 3.409±1.31 N/A 0.063±0.02
ENSMUSG00000082104 ENSMUST00000117215 N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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