C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0001SJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004204-ENSDARG00000040822 CGP 7955 9:34716507-34742987
GeneTranscriptPositionBiotype
ENSDARG00000004204 (efhc2)
EF-hand domain (C-terminal) containing 2
ENSDART00000008737 (efhc2-001) 34716507-34739632 protein_coding
ENSDART00000142788 (efhc2-002) 34716509-34739616 nonsense_mediated_decay
ENSDARG00000040822 (fundc1)
FUN14 domain containing 1
ENSDART00000059837 (fundc1-001) 34741336-34742987 protein_coding
ENSDART00000135343 (fundc1-003) 34741875-34742940 retained_intron
ENSDART00000140779 (fundc1-002) 34741597-34742880 protein_coding
ENSDART00000143193 (fundc1-004) 34741342-34742294 processed_transcript
CIL_0001SJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183690-ENSG00000069509 CGP 9606 X:44147882-44543001
GeneTranscriptPositionBiotype
ENSG00000069509 (FUNDC1)
FUN14 domain containing 1
ENST00000378045 (FUNDC1-001) 44523639-44543001 protein_coding
ENST00000483115 (FUNDC1-002) 44523772-44542304 processed_transcript
ENSG00000183690 (EFHC2)
EF-hand domain (C-terminal) containing 2
ENST00000343571 (EFHC2-003) 44147882-44225756 processed_transcript
ENST00000420999 (EFHC2-001) 44148665-44343672 protein_coding
ENSG00000198414 (TATDN2P1)
TatD DNase domain containing 2 pseudogene 1
ENST00000443767 (TATDN2P1-001) 44283916-44286246 processed_pseudogene
ENSG00000214018 (RRM2P3)
ribonucleotide reductase M2 polypeptide pseudogene 3
ENST00000426279 (RRM2P3-001) 44309314-44310476 processed_pseudogene
ENSG00000215035 (FDPSP5)
farnesyl diphosphate synthase pseudogene 5
ENST00000399474 (FDPSP5-001) 44476027-44477422 processed_pseudogene
CIL_0001SJ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025038-ENSMUSG00000025040 CGP 10090 X:17132049-17572325
GeneTranscriptPositionBiotype
ENSMUSG00000025038 (Efhc2)
EF-hand domain (C-terminal) containing 2
ENSMUST00000026014 (Efhc2-001) 17132049-17319368 protein_coding
ENSMUSG00000025040 (Fundc1)
FUN14 domain containing 1
ENSMUST00000026016 (Fundc1-001) 17556564-17572325 protein_coding
ENSMUST00000127690 (Fundc1-003) 17557898-17571624 processed_transcript
ENSMUST00000142638 (Fundc1-002) 17557916-17572007 protein_coding
ENSMUST00000176638 (Fundc1-004) 17557898-17572253 protein_coding
ENSMUST00000177213 (Fundc1-005) 17557524-17571641 protein_coding
ENSMUSG00000081858 (Gm14514)
predicted gene 14514
ENSMUST00000121680 (Gm14514-001) 17252062-17254394 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001SJ_0001ENSDARG00000004204ENSDART00000008737ENSDART00000142788ENSDARG00000040822ENSDART00000059837ENSDART00000135343ENSDART00000140779ENSDART00000143193CIL_0001SJ_0002ENSG00000069509ENST00000378045ENST00000483115ENSG00000183690ENST00000343571ENST00000420999ENSG00000198414ENST00000443767ENSG00000214018ENST00000426279ENSG00000215035ENST00000399474CIL_0001SJ_0003ENSMUSG00000025038ENSMUST00000026014ENSMUSG00000025040ENSMUST00000026016ENSMUST00000127690ENSMUST00000142638ENSMUST00000176638ENSMUST00000177213ENSMUSG00000081858ENSMUST00000121680
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001SJ_0001ENSDARG00000004204ENSDART00000008737ENSDART00000142788ENSDARG00000040822ENSDART00000059837ENSDART00000140779ENSDART00000143193CIL_0001SJ_0002ENSG00000069509ENST00000378045ENST00000483115ENSG00000183690ENST00000343571ENST00000420999ENSG00000198414ENST00000443767ENSG00000214018ENST00000426279ENSG00000215035ENST00000399474CIL_0001SJ_0003ENSMUSG00000025038ENSMUST00000026014ENSMUSG00000025040ENSMUST00000026016ENSMUST00000142638ENSMUST00000176638ENSMUST00000177213ENSMUSG00000081858ENSMUST00000121680
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004204 ENSDART00000008737 N/A N/A N/A 0.423±0.38 N/A N/A N/A 0.857±0.91 N/A N/A 0.027±0.00 N/A N/A N/A
ENSDART00000142788 N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A N/A 0.028±0.00 N/A N/A N/A
ENSDARG00000040822 ENSDART00000059837 N/A N/A N/A 73.708±26.28 N/A N/A 42.914±6.27 10.583±1.69 0.847±0.00 N/A 16.504±0.00 N/A N/A N/A
ENSDART00000135343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140779 N/A N/A N/A 24.161±0.00 N/A N/A 6.546±0.00 3.423±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000143193 N/A N/A N/A 67.448±16.66 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000069509 ENST00000378045 3.079±0.00 5.616±0.00 0.872±0.00 11.179±2.31 2.827±2.19 1.853±0.08 5.026±1.72 4.563±4.05 2.063±0.13 1.841±0.78 1.034±0.04 9.560±3.54 5.423±0.66 9.958±0.91
ENST00000483115 N/A N/A N/A 2.814±0.00 2.655±0.00 2.549±0.00 N/A 1.308±0.00 N/A 1.377±0.00 N/A N/A 6.288±0.00 5.888±0.00
ENSG00000183690 ENST00000343571 0.059±0.00 N/A N/A N/A 0.082±0.00 0.074±0.00 N/A N/A 0.009±0.00 0.484±0.00 N/A 0.118±0.10 0.114±0.00 N/A
ENST00000420999 0.064±0.00 0.239±0.00 0.298±0.00 0.693±0.34 0.115±0.01 0.249±0.08 2.175±1.38 0.454±0.00 0.425±0.00 1.207±0.74 N/A 0.899±0.55 0.262±0.16 4.487±0.26
ENSG00000198414 ENST00000443767 N/A N/A 0.064±0.00 0.014±0.00 0.020±0.00 N/A 0.203±0.00 N/A N/A N/A N/A N/A N/A 0.683±0.00
ENSG00000214018 ENST00000426279 0.026±0.00 0.211±0.00 0.047±0.00 0.112±0.00 0.159±0.00 N/A 0.248±0.16 0.148±0.00 0.044±0.00 0.160±0.06 N/A 0.151±0.16 0.060±0.02 0.218±0.02
ENSG00000215035 ENST00000399474 0.030±0.00 N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A 0.032±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025038 ENSMUST00000026014 0.124±0.11 0.108±0.03 0.091±0.02 0.502±0.18 0.080±0.06 0.059±0.00 0.049±0.02 0.136±0.03 0.015±0.00 0.181±0.02 0.068±0.02 0.283±0.14 0.130±0.07 5.169±1.03
ENSMUSG00000025040 ENSMUST00000026016 7.811±2.40 5.512±1.59 10.431±2.46 9.471±4.93 7.132±0.73 3.568±1.44 6.329±0.45 8.928±1.33 4.112±2.49 11.370±1.54 6.774±0.50 8.657±3.60 6.360±4.28 0.743±0.41
ENSMUST00000127690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142638 N/A N/A N/A 35.596±0.00 N/A N/A N/A N/A N/A N/A N/A 59.238±0.00 30.467±4.81 2.156±0.00
ENSMUST00000176638 N/A 3.612±0.57 N/A N/A 3.288±0.00 2.350±0.43 4.701±0.00 6.259±0.95 2.636±1.13 7.400±0.69 N/A N/A N/A 1.269±0.42
ENSMUST00000177213 3.163±0.68 3.149±0.00 N/A N/A 2.795±1.60 N/A N/A N/A 0.409±0.00 N/A N/A 2.835±0.94 2.513±1.17 N/A
ENSMUSG00000081858 ENSMUST00000121680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.05

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