C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00027Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069100-ENSDARG00000069099 CGP 7955 8:21633143-21648264
GeneTranscriptPositionBiotype
ENSDARG00000069099 (tmco1)
transmembrane and coiled-coil domains 1 		ENSDART00000100276 (tmco1-001) 21642525-21648264 protein_coding
ENSDART00000127371 (tmco1-002) 21642525-21648251 protein_coding
ENSDART00000138478 (tmco1-003) 21643015-21645041 retained_intron
ENSDARG00000069100 (aldh9a1a.1)
aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 		ENSDART00000100283 (aldh9a1a.1-001) 21633143-21641540 protein_coding
ENSDART00000131322 (aldh9a1a.1-003) 21637518-21641169 protein_coding
ENSDART00000137838 (aldh9a1a.1-002) 21633143-21641269 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00027Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000143149-ENSG00000143183 CGP 9606 1:165662216-165827755
GeneTranscriptPositionBiotype
ENSG00000143149 (ALDH9A1)
aldehyde dehydrogenase 9 family, member A1 		ENST00000354775 (ALDH9A1-001) 165662216-165698863 protein_coding
ENST00000461664 (ALDH9A1-004) 165680487-165698540 processed_transcript
ENST00000463610 (ALDH9A1-003) 165662775-165665206 processed_transcript
ENST00000471457 (ALDH9A1-005) 165682825-165698513 retained_intron
ENST00000491436 (ALDH9A1-002) 165668674-165680635 processed_transcript
ENSG00000143179 (UCK2)
uridine-cytidine kinase 2 		ENST00000367879 (UCK2-001) 165827531-165908109 protein_coding
ENST00000462329 (UCK2-002) 165892652-165908100 processed_transcript
ENST00000463772 (UCK2-007) 165897979-165908109 processed_transcript
ENST00000464197 (UCK2-004) 165894166-165907790 processed_transcript
ENST00000469256 (UCK2-005) 165895570-165908074 protein_coding
ENST00000470820 (UCK2-006) 165895585-165907871 protein_coding
ENST00000475333 (UCK2-008) 165904066-165907948 processed_transcript
ENST00000479872 (UCK2-003) 165902595-165911618 retained_intron
ENSG00000225272 (RP11-466F5.4)
 ENST00000437709 (RP11-466F5.4-001) 165676310-165676781 processed_pseudogene
ENSG00000230175 (RP11-466F5.3)
 ENST00000447545 (RP11-466F5.3-001) 165671256-165671725 processed_pseudogene
ENSG00000230659 (RP11-466F5.9)
 ENST00000415894 (RP11-466F5.9-001) 165819353-165819787 processed_pseudogene
ENSG00000273365 (RP11-466F5.10)
 ENST00000608512 (RP11-466F5.10-001) 165706556-165707284 lincRNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00027Y_0001ENSDARG00000069099ENSDART00000100276ENSDART00000127371ENSDART00000138478ENSDARG00000069100ENSDART00000100283ENSDART00000131322ENSDART00000137838CIL_00027Y_0002ENSG00000143149ENST00000354775ENST00000461664ENST00000463610ENST00000471457ENST00000491436ENSG00000143179ENST00000367879ENST00000462329ENST00000463772ENST00000464197ENST00000469256ENST00000470820ENST00000475333ENST00000479872ENSG00000225272ENST00000437709ENSG00000230175ENST00000447545ENSG00000230659ENST00000415894ENSG00000273365ENST00000608512
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00027Y_0001ENSDARG00000069099ENSDART00000100276ENSDART00000127371ENSDART00000138478ENSDARG00000069100ENSDART00000100283ENSDART00000137838CIL_00027Y_0002ENSG00000143149ENST00000354775ENST00000463610ENSG00000143179ENST00000367879ENST00000469256ENST00000479872ENSG00000225272ENST00000437709ENSG00000230175ENST00000447545ENSG00000230659ENST00000415894ENSG00000273365ENST00000608512
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000069099 ENSDART00000100276 N/A N/A N/A 21.945±2.31 N/A N/A 11.308±3.91 27.517±4.47 1.686±0.00 N/A 7.733±0.00 N/A N/A N/A
ENSDART00000127371 N/A N/A N/A 3.154±0.74 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138478 N/A N/A N/A N/A N/A N/A N/A N/A 1.911±0.00 N/A N/A N/A N/A N/A
ENSDARG00000069100 ENSDART00000100283 N/A N/A N/A 9.476±0.10 N/A N/A 31.592±12.10 11.047±0.00 16.694±0.00 N/A 8.219±0.00 N/A N/A N/A
ENSDART00000131322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137838 N/A N/A N/A 12.672±8.38 N/A N/A 39.936±16.88 114.498±32.47 N/A N/A 2.347±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143149 ENST00000354775 32.365±0.00 27.791±0.00 10.663±0.00 18.682±11.29 48.247±42.07 15.439±7.38 12.787±7.64 35.475±8.27 16.697±8.54 12.878±6.87 12.835±5.58 20.445±12.51 21.293±10.03 39.673±16.34
ENST00000461664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463610 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.566±0.00 N/A 23.672±0.00 22.935±0.00 48.262±0.00
ENST00000471457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000143179 ENST00000367879 N/A N/A N/A N/A 6.468±0.00 N/A N/A N/A N/A 14.608±0.00 4.989±0.00 N/A N/A N/A
ENST00000462329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.976±0.00 N/A
ENST00000470820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.264±0.00 N/A N/A
ENSG00000225272 ENST00000437709 N/A 0.116±0.00 N/A 0.088±0.00 0.029±0.00 0.054±0.00 0.027±0.00 N/A N/A 0.223±0.00 N/A 0.043±0.00 N/A 0.052±0.00
ENSG00000230175 ENST00000447545 0.030±0.00 0.125±0.00 N/A 0.130±0.00 0.031±0.00 0.368±0.28 N/A 0.936±0.87 0.144±0.00 N/A 0.055±0.00 N/A N/A 0.115±0.00
ENSG00000230659 ENST00000415894 0.090±0.00 0.125±0.00 N/A 0.126±0.00 0.092±0.00 0.058±0.00 0.055±0.00 0.031±0.00 N/A 0.281±0.00 0.648±0.00 N/A N/A 0.251±0.00
ENSG00000273365 ENST00000608512 0.055±0.00 0.221±0.00 N/A 0.292±0.00 0.012±0.00 0.260±0.00 0.025±0.00 0.050±0.00 0.022±0.00 0.041±0.00 N/A 0.261±0.23 N/A 0.269±0.15

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