C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane and coiled-coil domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000069099 tmco1 7955 - 8:21642525-21648264 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000100276 tmco1-001 21642525-21648264 protein_coding
  ENSDART00000127371 tmco1-002 21642525-21648251 protein_coding
  ENSDART00000138478 tmco1-003 21643015-21645041 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000100276ENSDART00000127371ENSDART00000138478
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000100276 21.945±2.31 11.308±3.91 27.517±4.47 1.686±0.00 7.733±0.00
ENSDART00000127371 3.154±0.74 N/A N/A N/A N/A
ENSDART00000138478 N/A N/A N/A 1.911±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027Y CIL_00027Y_0001 CGP 8:21633143-21648264
CIL_00027V CIL_00027V_0001 CGP 8:21642525-21671137

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000143183 TMCO1 transmembrane and coiled-coil domains 1 protein_coding Homo_sapiens
ENSMUSG00000052428 Tmco1 transmembrane and coiled-coil domains 1 protein_coding Mus_musculus

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