Institute of Cardiovascular Regeneration Webtool Repository

Source ID	Type	Tax ID	Position
ENSG00000185324-ENSG00000158792	CGP	9606	16:89680737-89701705
Gene	Transcript	Position	Biotype
ENSG00000158792 (SPATA2L) spermatogenesis associated 2-like	ENST00000289805 (SPATA2L-001)	89696343-89701695	protein_coding
ENST00000335360 (SPATA2L-002)	89696357-89701705	protein_coding
ENST00000569918 (SPATA2L-003)	89698068-89701640	protein_coding
ENSG00000185324 (CDK10) cyclin-dependent kinase 10	ENST00000331006 (CDK10-016)	89680737-89696353	protein_coding
ENST00000353379 (CDK10-001)	89686668-89696364	protein_coding
ENST00000378277 (CDK10-015)	89686713-89692682	retained_intron
ENST00000472018 (CDK10-002)	89686700-89696354	retained_intron
ENST00000502547 (CDK10-009)	89686684-89691507	nonsense_mediated_decay
ENST00000503560 (CDK10-013)	89686951-89690557	processed_transcript
ENST00000504473 (CDK10-014)	89686972-89693495	retained_intron
ENST00000505473 (CDK10-003)	89686670-89696164	protein_coding
ENST00000505733 (CDK10-006)	89686690-89696354	retained_intron
ENST00000507205 (CDK10-005)	89686692-89694040	retained_intron
ENST00000508723 (CDK10-008)	89686670-89691535	nonsense_mediated_decay
ENST00000510811 (CDK10-019)	89686691-89696038	nonsense_mediated_decay
ENST00000511415 (CDK10-012)	89686680-89693402	nonsense_mediated_decay
ENST00000512912 (CDK10-011)	89686690-89692514	nonsense_mediated_decay
ENST00000514965 (CDK10-010)	89686728-89691512	processed_transcript
ENST00000561477 (CDK10-021)	89691826-89694454	retained_intron
ENST00000564192 (CDK10-022)	89686706-89694972	protein_coding
ENST00000565470 (CDK10-017)	89694184-89696094	nonsense_mediated_decay
ENST00000567932 (CDK10-020)	89692237-89693718	retained_intron
ENST00000568456 (CDK10-004)	89689503-89691845	retained_intron
ENST00000617879 (CDK10-201)	89690606-89695775	protein_coding
ENSG00000260259 (RP11-368I7.4)	ENST00000567544 (RP11-368I7.4-001)	89682620-89686569	lincRNA
ENSG00000275734 (RP11-368I7.6)	ENST00000615131 (RP11-368I7.6-001)	89684642-89685304	antisense

Notice (8): Undefined index: CIL_00032S_0002 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_00032S_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000158792' => 'spermatogenesis associated 2-like',
		'ENSG00000185324' => 'cyclin-dependent kinase 10',
		'ENSG00000260259' => null,
		'ENSG00000275734' => null,
		'ENSMUSG00000033594' => 'spermatogenesis associated 2-like',
		'ENSMUSG00000033862' => 'cyclin-dependent kinase 10',
		'ENSMUSG00000097637' => 'RIKEN cDNA 4933417D19 gene'
	),
	'gene_name_arr' => array(
		'ENSG00000158792' => 'SPATA2L',
		'ENSG00000185324' => 'CDK10',
		'ENSG00000260259' => 'RP11-368I7.4',
		'ENSG00000275734' => 'RP11-368I7.6',
		'ENSMUSG00000033594' => 'Spata2l',
		'ENSMUSG00000033862' => 'Cdk10',
		'ENSMUSG00000097637' => '4933417D19Rik'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 7 => 'Bladder',
		(int) 9 => 'Brain',
		(int) 15 => 'Breast',
		(int) 22 => 'Colon',
		(int) 27 => 'Heart',
		(int) 33 => 'Kidney',
		(int) 41 => 'Liver',
		(int) 50 => 'Lung',
		(int) 56 => 'Muscle',
		(int) 60 => 'Ovary',
		(int) 67 => 'Placenta',
		(int) 72 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 30,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000289805' => array(
			'start' => '89696343',
			'end' => '89701695',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'SPATA2L-001'
		),
		'ENST00000335360' => array(
			'start' => '89696357',
			'end' => '89701705',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'SPATA2L-002'
		),
		'ENST00000569918' => array(
			'start' => '89698068',
			'end' => '89701640',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'SPATA2L-003'
		),
		'ENST00000331006' => array(
			'start' => '89680737',
			'end' => '89696353',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CDK10-016'
		),
		'ENST00000353379' => array(
			'start' => '89686668',
			'end' => '89696364',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CDK10-001'
		),
		'ENST00000378277' => array(
			'start' => '89686713',
			'end' => '89692682',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-015'
		),
		'ENST00000472018' => array(
			'start' => '89686700',
			'end' => '89696354',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-002'
		),
		'ENST00000502547' => array(
			'start' => '89686684',
			'end' => '89691507',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-009'
		),
		'ENST00000503560' => array(
			'start' => '89686951',
			'end' => '89690557',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CDK10-013'
		),
		'ENST00000504473' => array(
			'start' => '89686972',
			'end' => '89693495',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-014'
		),
		'ENST00000505473' => array(
			'start' => '89686670',
			'end' => '89696164',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CDK10-003'
		),
		'ENST00000505733' => array(
			'start' => '89686690',
			'end' => '89696354',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-006'
		),
		'ENST00000507205' => array(
			'start' => '89686692',
			'end' => '89694040',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-005'
		),
		'ENST00000508723' => array(
			'start' => '89686670',
			'end' => '89691535',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-008'
		),
		'ENST00000510811' => array(
			'start' => '89686691',
			'end' => '89696038',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-019'
		),
		'ENST00000511415' => array(
			'start' => '89686680',
			'end' => '89693402',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-012'
		),
		'ENST00000512912' => array(
			'start' => '89686690',
			'end' => '89692514',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-011'
		),
		'ENST00000514965' => array(
			'start' => '89686728',
			'end' => '89691512',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CDK10-010'
		),
		'ENST00000561477' => array(
			'start' => '89691826',
			'end' => '89694454',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-021'
		),
		'ENST00000564192' => array(
			'start' => '89686706',
			'end' => '89694972',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CDK10-022'
		),
		'ENST00000565470' => array(
			'start' => '89694184',
			'end' => '89696094',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-017'
		),
		'ENST00000567932' => array(
			'start' => '89692237',
			'end' => '89693718',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-020'
		),
		'ENST00000568456' => array(
			'start' => '89689503',
			'end' => '89691845',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-004'
		),
		'ENST00000617879' => array(
			'start' => '89690606',
			'end' => '89695775',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CDK10-201'
		),
		'ENST00000567544' => array(
			'start' => '89682620',
			'end' => '89686569',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-368I7.4-001'
		),
		'ENST00000615131' => array(
			'start' => '89684642',
			'end' => '89685304',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP11-368I7.6-001'
		),
		'ENSMUST00000098327' => array(
			'start' => '123232258',
			'end' => '123236209',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Spata2l-201'
		),
		'ENSMUST00000166768' => array(
			'start' => '123232255',
			'end' => '123236206',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Spata2l-202'
		),
		'ENSMUST00000036880' => array(
			'start' => '123224841',
			'end' => '123232250',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Cdk10-201'
		),
		'ENSMUST00000181432' => array(
			'start' => '123235091',
			'end' => '123242359',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => '4933417D19Rik-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_00032S_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_00032S_0001' => array(
		'genes_in_region' => array(
			'ENSG00000158792' => array(
				[maximum depth reached]
			),
			'ENSG00000185324' => array(
				[maximum depth reached]
			),
			'ENSG00000260259' => array(
				[maximum depth reached]
			),
			'ENSG00000275734' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Brain',
			(int) 2 => 'Breast',
			(int) 3 => 'Colon',
			(int) 4 => 'Heart',
			(int) 5 => 'Kidney',
			(int) 6 => 'Lung',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Kidney',
			(int) 11 => 'Breast',
			(int) 12 => 'Heart',
			(int) 13 => 'Muscle',
			(int) 14 => 'Adipose',
			(int) 15 => 'Brain',
			(int) 16 => 'Breast',
			(int) 17 => 'Colon',
			(int) 18 => 'Heart',
			(int) 19 => 'Kidney',
			(int) 20 => 'Liver',
			(int) 21 => 'Lung',
			(int) 22 => 'Muscle',
			(int) 23 => 'Ovary',
			(int) 24 => 'Placenta',
			(int) 25 => 'Testis',
			(int) 26 => 'Adrenal',
			(int) 27 => 'Bladder',
			(int) 28 => 'Brain',
			(int) 29 => 'Breast',
			(int) 30 => 'Heart',
			(int) 31 => 'Kidney',
			(int) 32 => 'Liver',
			(int) 33 => 'Lung',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Bladder',
			(int) 38 => 'Liver',
			(int) 39 => 'Liver',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Muscle',
			(int) 43 => 'Ovary',
			(int) 44 => 'Lung',
			(int) 45 => 'Kidney',
			(int) 46 => 'Liver',
			(int) 47 => 'Placenta',
			(int) 48 => 'Breast',
			(int) 49 => 'Colon',
			(int) 50 => 'Liver',
			(int) 51 => 'Kidney',
			(int) 52 => 'Ovary',
			(int) 53 => 'Adipose',
			(int) 54 => 'Adrenal',
			(int) 55 => 'Brain',
			(int) 56 => 'Breast',
			(int) 57 => 'Colon',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Lung',
			(int) 62 => 'Ovary',
			(int) 63 => 'Testis',
			(int) 64 => 'Adipose',
			(int) 65 => 'Adrenal',
			(int) 66 => 'Brain',
			(int) 67 => 'Breast',
			(int) 68 => 'Colon',
			(int) 69 => 'Heart',
			(int) 70 => 'Kidney',
			(int) 71 => 'Liver',
			(int) 72 => 'Lung',
			(int) 73 => 'Muscle',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000158792' => 'spermatogenesis associated 2-like',
	'ENSG00000185324' => 'cyclin-dependent kinase 10',
	'ENSG00000260259' => null,
	'ENSG00000275734' => null,
	'ENSMUSG00000033594' => 'spermatogenesis associated 2-like',
	'ENSMUSG00000033862' => 'cyclin-dependent kinase 10',
	'ENSMUSG00000097637' => 'RIKEN cDNA 4933417D19 gene'
)
$gene_name_arr = array(
	'ENSG00000158792' => 'SPATA2L',
	'ENSG00000185324' => 'CDK10',
	'ENSG00000260259' => 'RP11-368I7.4',
	'ENSG00000275734' => 'RP11-368I7.6',
	'ENSMUSG00000033594' => 'Spata2l',
	'ENSMUSG00000033862' => 'Cdk10',
	'ENSMUSG00000097637' => '4933417D19Rik'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00032S_0001',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '89680737',
			'seq_end' => '89701705',
			'region_length' => '20968',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000185324-ENSG00000158792'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00032S_0002',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '123224841',
			'seq_end' => '123236209',
			'region_length' => '11368',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000033862-ENSMUSG00000033594'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 7 => 'Bladder',
	(int) 9 => 'Brain',
	(int) 15 => 'Breast',
	(int) 22 => 'Colon',
	(int) 27 => 'Heart',
	(int) 33 => 'Kidney',
	(int) 41 => 'Liver',
	(int) 50 => 'Lung',
	(int) 56 => 'Muscle',
	(int) 60 => 'Ovary',
	(int) 67 => 'Placenta',
	(int) 72 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 30
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000289805' => array(
		'start' => '89696343',
		'end' => '89701695',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'SPATA2L-001'
	),
	'ENST00000335360' => array(
		'start' => '89696357',
		'end' => '89701705',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'SPATA2L-002'
	),
	'ENST00000569918' => array(
		'start' => '89698068',
		'end' => '89701640',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'SPATA2L-003'
	),
	'ENST00000331006' => array(
		'start' => '89680737',
		'end' => '89696353',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CDK10-016'
	),
	'ENST00000353379' => array(
		'start' => '89686668',
		'end' => '89696364',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CDK10-001'
	),
	'ENST00000378277' => array(
		'start' => '89686713',
		'end' => '89692682',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-015'
	),
	'ENST00000472018' => array(
		'start' => '89686700',
		'end' => '89696354',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-002'
	),
	'ENST00000502547' => array(
		'start' => '89686684',
		'end' => '89691507',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-009'
	),
	'ENST00000503560' => array(
		'start' => '89686951',
		'end' => '89690557',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CDK10-013'
	),
	'ENST00000504473' => array(
		'start' => '89686972',
		'end' => '89693495',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-014'
	),
	'ENST00000505473' => array(
		'start' => '89686670',
		'end' => '89696164',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CDK10-003'
	),
	'ENST00000505733' => array(
		'start' => '89686690',
		'end' => '89696354',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-006'
	),
	'ENST00000507205' => array(
		'start' => '89686692',
		'end' => '89694040',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-005'
	),
	'ENST00000508723' => array(
		'start' => '89686670',
		'end' => '89691535',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-008'
	),
	'ENST00000510811' => array(
		'start' => '89686691',
		'end' => '89696038',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-019'
	),
	'ENST00000511415' => array(
		'start' => '89686680',
		'end' => '89693402',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-012'
	),
	'ENST00000512912' => array(
		'start' => '89686690',
		'end' => '89692514',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-011'
	),
	'ENST00000514965' => array(
		'start' => '89686728',
		'end' => '89691512',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CDK10-010'
	),
	'ENST00000561477' => array(
		'start' => '89691826',
		'end' => '89694454',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-021'
	),
	'ENST00000564192' => array(
		'start' => '89686706',
		'end' => '89694972',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CDK10-022'
	),
	'ENST00000565470' => array(
		'start' => '89694184',
		'end' => '89696094',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-017'
	),
	'ENST00000567932' => array(
		'start' => '89692237',
		'end' => '89693718',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-020'
	),
	'ENST00000568456' => array(
		'start' => '89689503',
		'end' => '89691845',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-004'
	),
	'ENST00000617879' => array(
		'start' => '89690606',
		'end' => '89695775',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CDK10-201'
	),
	'ENST00000567544' => array(
		'start' => '89682620',
		'end' => '89686569',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-368I7.4-001'
	),
	'ENST00000615131' => array(
		'start' => '89684642',
		'end' => '89685304',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP11-368I7.6-001'
	),
	'ENSMUST00000098327' => array(
		'start' => '123232258',
		'end' => '123236209',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Spata2l-201'
	),
	'ENSMUST00000166768' => array(
		'start' => '123232255',
		'end' => '123236206',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Spata2l-202'
	),
	'ENSMUST00000036880' => array(
		'start' => '123224841',
		'end' => '123232250',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Cdk10-201'
	),
	'ENSMUST00000181432' => array(
		'start' => '123235091',
		'end' => '123242359',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => '4933417D19Rik-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_00032S_0001' => array(
		'genes_in_region' => array(
			'ENSG00000158792' => array(
				[maximum depth reached]
			),
			'ENSG00000185324' => array(
				[maximum depth reached]
			),
			'ENSG00000260259' => array(
				[maximum depth reached]
			),
			'ENSG00000275734' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Brain',
			(int) 2 => 'Breast',
			(int) 3 => 'Colon',
			(int) 4 => 'Heart',
			(int) 5 => 'Kidney',
			(int) 6 => 'Lung',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Kidney',
			(int) 11 => 'Breast',
			(int) 12 => 'Heart',
			(int) 13 => 'Muscle',
			(int) 14 => 'Adipose',
			(int) 15 => 'Brain',
			(int) 16 => 'Breast',
			(int) 17 => 'Colon',
			(int) 18 => 'Heart',
			(int) 19 => 'Kidney',
			(int) 20 => 'Liver',
			(int) 21 => 'Lung',
			(int) 22 => 'Muscle',
			(int) 23 => 'Ovary',
			(int) 24 => 'Placenta',
			(int) 25 => 'Testis',
			(int) 26 => 'Adrenal',
			(int) 27 => 'Bladder',
			(int) 28 => 'Brain',
			(int) 29 => 'Breast',
			(int) 30 => 'Heart',
			(int) 31 => 'Kidney',
			(int) 32 => 'Liver',
			(int) 33 => 'Lung',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Bladder',
			(int) 38 => 'Liver',
			(int) 39 => 'Liver',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Muscle',
			(int) 43 => 'Ovary',
			(int) 44 => 'Lung',
			(int) 45 => 'Kidney',
			(int) 46 => 'Liver',
			(int) 47 => 'Placenta',
			(int) 48 => 'Breast',
			(int) 49 => 'Colon',
			(int) 50 => 'Liver',
			(int) 51 => 'Kidney',
			(int) 52 => 'Ovary',
			(int) 53 => 'Adipose',
			(int) 54 => 'Adrenal',
			(int) 55 => 'Brain',
			(int) 56 => 'Breast',
			(int) 57 => 'Colon',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Lung',
			(int) 62 => 'Ovary',
			(int) 63 => 'Testis',
			(int) 64 => 'Adipose',
			(int) 65 => 'Adrenal',
			(int) 66 => 'Brain',
			(int) 67 => 'Breast',
			(int) 68 => 'Colon',
			(int) 69 => 'Heart',
			(int) 70 => 'Kidney',
			(int) 71 => 'Liver',
			(int) 72 => 'Lung',
			(int) 73 => 'Muscle',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_00032S_0002',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '123224841',
		'seq_end' => '123236209',
		'region_length' => '11368',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000033862-ENSMUSG00000033594'
	)
)
$gene_el = array(
	'ENST00000615131' => array(
		'Adipose' => array(
			'average_FPKM' => '0.220',
			'stddev_FPKM' => '0.00'
		),
		'Adrenal' => array(
			'average_FPKM' => '1.378',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.433',
			'stddev_FPKM' => '0.27'
		),
		'Breast' => array(
			'average_FPKM' => '0.467',
			'stddev_FPKM' => '0.00'
		),
		'Colon' => array(
			'average_FPKM' => '0.365',
			'stddev_FPKM' => '0.11'
		),
		'Heart' => array(
			'average_FPKM' => '0.520',
			'stddev_FPKM' => '0.00'
		),
		'Kidney' => array(
			'average_FPKM' => '0.999',
			'stddev_FPKM' => '0.00'
		),
		'Liver' => array(
			'average_FPKM' => '0.254',
			'stddev_FPKM' => '0.14'
		),
		'Lung' => array(
			'average_FPKM' => '0.768',
			'stddev_FPKM' => '0.00'
		),
		'Muscle' => array(
			'average_FPKM' => '1.233',
			'stddev_FPKM' => '0.00'
		),
		'Ovary' => array(
			'average_FPKM' => '0.843',
			'stddev_FPKM' => '0.39'
		),
		'Placenta' => array(
			'average_FPKM' => '0.253',
			'stddev_FPKM' => '0.02'
		),
		'Testis' => array(
			'average_FPKM' => '1.614',
			'stddev_FPKM' => '0.71'
		)
	)
)
$gene_key = 'ENSG00000275734'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.220',
		'stddev_FPKM' => '0.00'
	),
	'Adrenal' => array(
		'average_FPKM' => '1.378',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.433',
		'stddev_FPKM' => '0.27'
	),
	'Breast' => array(
		'average_FPKM' => '0.467',
		'stddev_FPKM' => '0.00'
	),
	'Colon' => array(
		'average_FPKM' => '0.365',
		'stddev_FPKM' => '0.11'
	),
	'Heart' => array(
		'average_FPKM' => '0.520',
		'stddev_FPKM' => '0.00'
	),
	'Kidney' => array(
		'average_FPKM' => '0.999',
		'stddev_FPKM' => '0.00'
	),
	'Liver' => array(
		'average_FPKM' => '0.254',
		'stddev_FPKM' => '0.14'
	),
	'Lung' => array(
		'average_FPKM' => '0.768',
		'stddev_FPKM' => '0.00'
	),
	'Muscle' => array(
		'average_FPKM' => '1.233',
		'stddev_FPKM' => '0.00'
	),
	'Ovary' => array(
		'average_FPKM' => '0.843',
		'stddev_FPKM' => '0.39'
	),
	'Placenta' => array(
		'average_FPKM' => '0.253',
		'stddev_FPKM' => '0.02'
	),
	'Testis' => array(
		'average_FPKM' => '1.614',
		'stddev_FPKM' => '0.71'
	)
)
$tran_key = 'ENST00000615131'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_00032S_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000158792' => 'spermatogenesis associated 2-like',
		'ENSG00000185324' => 'cyclin-dependent kinase 10',
		'ENSG00000260259' => null,
		'ENSG00000275734' => null,
		'ENSMUSG00000033594' => 'spermatogenesis associated 2-like',
		'ENSMUSG00000033862' => 'cyclin-dependent kinase 10',
		'ENSMUSG00000097637' => 'RIKEN cDNA 4933417D19 gene'
	),
	'gene_name_arr' => array(
		'ENSG00000158792' => 'SPATA2L',
		'ENSG00000185324' => 'CDK10',
		'ENSG00000260259' => 'RP11-368I7.4',
		'ENSG00000275734' => 'RP11-368I7.6',
		'ENSMUSG00000033594' => 'Spata2l',
		'ENSMUSG00000033862' => 'Cdk10',
		'ENSMUSG00000097637' => '4933417D19Rik'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 7 => 'Bladder',
		(int) 9 => 'Brain',
		(int) 15 => 'Breast',
		(int) 22 => 'Colon',
		(int) 27 => 'Heart',
		(int) 33 => 'Kidney',
		(int) 41 => 'Liver',
		(int) 50 => 'Lung',
		(int) 56 => 'Muscle',
		(int) 60 => 'Ovary',
		(int) 67 => 'Placenta',
		(int) 72 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 30,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000289805' => array(
			'start' => '89696343',
			'end' => '89701695',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'SPATA2L-001'
		),
		'ENST00000335360' => array(
			'start' => '89696357',
			'end' => '89701705',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'SPATA2L-002'
		),
		'ENST00000569918' => array(
			'start' => '89698068',
			'end' => '89701640',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'SPATA2L-003'
		),
		'ENST00000331006' => array(
			'start' => '89680737',
			'end' => '89696353',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CDK10-016'
		),
		'ENST00000353379' => array(
			'start' => '89686668',
			'end' => '89696364',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CDK10-001'
		),
		'ENST00000378277' => array(
			'start' => '89686713',
			'end' => '89692682',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-015'
		),
		'ENST00000472018' => array(
			'start' => '89686700',
			'end' => '89696354',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-002'
		),
		'ENST00000502547' => array(
			'start' => '89686684',
			'end' => '89691507',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-009'
		),
		'ENST00000503560' => array(
			'start' => '89686951',
			'end' => '89690557',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CDK10-013'
		),
		'ENST00000504473' => array(
			'start' => '89686972',
			'end' => '89693495',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-014'
		),
		'ENST00000505473' => array(
			'start' => '89686670',
			'end' => '89696164',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CDK10-003'
		),
		'ENST00000505733' => array(
			'start' => '89686690',
			'end' => '89696354',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-006'
		),
		'ENST00000507205' => array(
			'start' => '89686692',
			'end' => '89694040',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-005'
		),
		'ENST00000508723' => array(
			'start' => '89686670',
			'end' => '89691535',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-008'
		),
		'ENST00000510811' => array(
			'start' => '89686691',
			'end' => '89696038',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-019'
		),
		'ENST00000511415' => array(
			'start' => '89686680',
			'end' => '89693402',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-012'
		),
		'ENST00000512912' => array(
			'start' => '89686690',
			'end' => '89692514',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-011'
		),
		'ENST00000514965' => array(
			'start' => '89686728',
			'end' => '89691512',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CDK10-010'
		),
		'ENST00000561477' => array(
			'start' => '89691826',
			'end' => '89694454',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-021'
		),
		'ENST00000564192' => array(
			'start' => '89686706',
			'end' => '89694972',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CDK10-022'
		),
		'ENST00000565470' => array(
			'start' => '89694184',
			'end' => '89696094',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CDK10-017'
		),
		'ENST00000567932' => array(
			'start' => '89692237',
			'end' => '89693718',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-020'
		),
		'ENST00000568456' => array(
			'start' => '89689503',
			'end' => '89691845',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CDK10-004'
		),
		'ENST00000617879' => array(
			'start' => '89690606',
			'end' => '89695775',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CDK10-201'
		),
		'ENST00000567544' => array(
			'start' => '89682620',
			'end' => '89686569',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-368I7.4-001'
		),
		'ENST00000615131' => array(
			'start' => '89684642',
			'end' => '89685304',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP11-368I7.6-001'
		),
		'ENSMUST00000098327' => array(
			'start' => '123232258',
			'end' => '123236209',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Spata2l-201'
		),
		'ENSMUST00000166768' => array(
			'start' => '123232255',
			'end' => '123236206',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Spata2l-202'
		),
		'ENSMUST00000036880' => array(
			'start' => '123224841',
			'end' => '123232250',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Cdk10-201'
		),
		'ENSMUST00000181432' => array(
			'start' => '123235091',
			'end' => '123242359',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => '4933417D19Rik-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_00032S_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_00032S_0001' => array(
		'genes_in_region' => array(
			'ENSG00000158792' => array(
				[maximum depth reached]
			),
			'ENSG00000185324' => array(
				[maximum depth reached]
			),
			'ENSG00000260259' => array(
				[maximum depth reached]
			),
			'ENSG00000275734' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Brain',
			(int) 2 => 'Breast',
			(int) 3 => 'Colon',
			(int) 4 => 'Heart',
			(int) 5 => 'Kidney',
			(int) 6 => 'Lung',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Kidney',
			(int) 11 => 'Breast',
			(int) 12 => 'Heart',
			(int) 13 => 'Muscle',
			(int) 14 => 'Adipose',
			(int) 15 => 'Brain',
			(int) 16 => 'Breast',
			(int) 17 => 'Colon',
			(int) 18 => 'Heart',
			(int) 19 => 'Kidney',
			(int) 20 => 'Liver',
			(int) 21 => 'Lung',
			(int) 22 => 'Muscle',
			(int) 23 => 'Ovary',
			(int) 24 => 'Placenta',
			(int) 25 => 'Testis',
			(int) 26 => 'Adrenal',
			(int) 27 => 'Bladder',
			(int) 28 => 'Brain',
			(int) 29 => 'Breast',
			(int) 30 => 'Heart',
			(int) 31 => 'Kidney',
			(int) 32 => 'Liver',
			(int) 33 => 'Lung',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Bladder',
			(int) 38 => 'Liver',
			(int) 39 => 'Liver',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Muscle',
			(int) 43 => 'Ovary',
			(int) 44 => 'Lung',
			(int) 45 => 'Kidney',
			(int) 46 => 'Liver',
			(int) 47 => 'Placenta',
			(int) 48 => 'Breast',
			(int) 49 => 'Colon',
			(int) 50 => 'Liver',
			(int) 51 => 'Kidney',
			(int) 52 => 'Ovary',
			(int) 53 => 'Adipose',
			(int) 54 => 'Adrenal',
			(int) 55 => 'Brain',
			(int) 56 => 'Breast',
			(int) 57 => 'Colon',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Lung',
			(int) 62 => 'Ovary',
			(int) 63 => 'Testis',
			(int) 64 => 'Adipose',
			(int) 65 => 'Adrenal',
			(int) 66 => 'Brain',
			(int) 67 => 'Breast',
			(int) 68 => 'Colon',
			(int) 69 => 'Heart',
			(int) 70 => 'Kidney',
			(int) 71 => 'Liver',
			(int) 72 => 'Lung',
			(int) 73 => 'Muscle',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000158792' => 'spermatogenesis associated 2-like',
	'ENSG00000185324' => 'cyclin-dependent kinase 10',
	'ENSG00000260259' => null,
	'ENSG00000275734' => null,
	'ENSMUSG00000033594' => 'spermatogenesis associated 2-like',
	'ENSMUSG00000033862' => 'cyclin-dependent kinase 10',
	'ENSMUSG00000097637' => 'RIKEN cDNA 4933417D19 gene'
)
$gene_name_arr = array(
	'ENSG00000158792' => 'SPATA2L',
	'ENSG00000185324' => 'CDK10',
	'ENSG00000260259' => 'RP11-368I7.4',
	'ENSG00000275734' => 'RP11-368I7.6',
	'ENSMUSG00000033594' => 'Spata2l',
	'ENSMUSG00000033862' => 'Cdk10',
	'ENSMUSG00000097637' => '4933417D19Rik'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00032S_0001',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '89680737',
			'seq_end' => '89701705',
			'region_length' => '20968',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000185324-ENSG00000158792'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00032S_0002',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '123224841',
			'seq_end' => '123236209',
			'region_length' => '11368',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000033862-ENSMUSG00000033594'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 7 => 'Bladder',
	(int) 9 => 'Brain',
	(int) 15 => 'Breast',
	(int) 22 => 'Colon',
	(int) 27 => 'Heart',
	(int) 33 => 'Kidney',
	(int) 41 => 'Liver',
	(int) 50 => 'Lung',
	(int) 56 => 'Muscle',
	(int) 60 => 'Ovary',
	(int) 67 => 'Placenta',
	(int) 72 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 30
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000289805' => array(
		'start' => '89696343',
		'end' => '89701695',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'SPATA2L-001'
	),
	'ENST00000335360' => array(
		'start' => '89696357',
		'end' => '89701705',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'SPATA2L-002'
	),
	'ENST00000569918' => array(
		'start' => '89698068',
		'end' => '89701640',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'SPATA2L-003'
	),
	'ENST00000331006' => array(
		'start' => '89680737',
		'end' => '89696353',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CDK10-016'
	),
	'ENST00000353379' => array(
		'start' => '89686668',
		'end' => '89696364',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CDK10-001'
	),
	'ENST00000378277' => array(
		'start' => '89686713',
		'end' => '89692682',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-015'
	),
	'ENST00000472018' => array(
		'start' => '89686700',
		'end' => '89696354',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-002'
	),
	'ENST00000502547' => array(
		'start' => '89686684',
		'end' => '89691507',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-009'
	),
	'ENST00000503560' => array(
		'start' => '89686951',
		'end' => '89690557',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CDK10-013'
	),
	'ENST00000504473' => array(
		'start' => '89686972',
		'end' => '89693495',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-014'
	),
	'ENST00000505473' => array(
		'start' => '89686670',
		'end' => '89696164',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CDK10-003'
	),
	'ENST00000505733' => array(
		'start' => '89686690',
		'end' => '89696354',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-006'
	),
	'ENST00000507205' => array(
		'start' => '89686692',
		'end' => '89694040',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-005'
	),
	'ENST00000508723' => array(
		'start' => '89686670',
		'end' => '89691535',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-008'
	),
	'ENST00000510811' => array(
		'start' => '89686691',
		'end' => '89696038',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-019'
	),
	'ENST00000511415' => array(
		'start' => '89686680',
		'end' => '89693402',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-012'
	),
	'ENST00000512912' => array(
		'start' => '89686690',
		'end' => '89692514',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-011'
	),
	'ENST00000514965' => array(
		'start' => '89686728',
		'end' => '89691512',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CDK10-010'
	),
	'ENST00000561477' => array(
		'start' => '89691826',
		'end' => '89694454',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-021'
	),
	'ENST00000564192' => array(
		'start' => '89686706',
		'end' => '89694972',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CDK10-022'
	),
	'ENST00000565470' => array(
		'start' => '89694184',
		'end' => '89696094',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CDK10-017'
	),
	'ENST00000567932' => array(
		'start' => '89692237',
		'end' => '89693718',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-020'
	),
	'ENST00000568456' => array(
		'start' => '89689503',
		'end' => '89691845',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CDK10-004'
	),
	'ENST00000617879' => array(
		'start' => '89690606',
		'end' => '89695775',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CDK10-201'
	),
	'ENST00000567544' => array(
		'start' => '89682620',
		'end' => '89686569',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-368I7.4-001'
	),
	'ENST00000615131' => array(
		'start' => '89684642',
		'end' => '89685304',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP11-368I7.6-001'
	),
	'ENSMUST00000098327' => array(
		'start' => '123232258',
		'end' => '123236209',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Spata2l-201'
	),
	'ENSMUST00000166768' => array(
		'start' => '123232255',
		'end' => '123236206',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Spata2l-202'
	),
	'ENSMUST00000036880' => array(
		'start' => '123224841',
		'end' => '123232250',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Cdk10-201'
	),
	'ENSMUST00000181432' => array(
		'start' => '123235091',
		'end' => '123242359',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => '4933417D19Rik-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_00032S_0001' => array(
		'genes_in_region' => array(
			'ENSG00000158792' => array(
				[maximum depth reached]
			),
			'ENSG00000185324' => array(
				[maximum depth reached]
			),
			'ENSG00000260259' => array(
				[maximum depth reached]
			),
			'ENSG00000275734' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Brain',
			(int) 2 => 'Breast',
			(int) 3 => 'Colon',
			(int) 4 => 'Heart',
			(int) 5 => 'Kidney',
			(int) 6 => 'Lung',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Kidney',
			(int) 11 => 'Breast',
			(int) 12 => 'Heart',
			(int) 13 => 'Muscle',
			(int) 14 => 'Adipose',
			(int) 15 => 'Brain',
			(int) 16 => 'Breast',
			(int) 17 => 'Colon',
			(int) 18 => 'Heart',
			(int) 19 => 'Kidney',
			(int) 20 => 'Liver',
			(int) 21 => 'Lung',
			(int) 22 => 'Muscle',
			(int) 23 => 'Ovary',
			(int) 24 => 'Placenta',
			(int) 25 => 'Testis',
			(int) 26 => 'Adrenal',
			(int) 27 => 'Bladder',
			(int) 28 => 'Brain',
			(int) 29 => 'Breast',
			(int) 30 => 'Heart',
			(int) 31 => 'Kidney',
			(int) 32 => 'Liver',
			(int) 33 => 'Lung',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Bladder',
			(int) 38 => 'Liver',
			(int) 39 => 'Liver',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Muscle',
			(int) 43 => 'Ovary',
			(int) 44 => 'Lung',
			(int) 45 => 'Kidney',
			(int) 46 => 'Liver',
			(int) 47 => 'Placenta',
			(int) 48 => 'Breast',
			(int) 49 => 'Colon',
			(int) 50 => 'Liver',
			(int) 51 => 'Kidney',
			(int) 52 => 'Ovary',
			(int) 53 => 'Adipose',
			(int) 54 => 'Adrenal',
			(int) 55 => 'Brain',
			(int) 56 => 'Breast',
			(int) 57 => 'Colon',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Lung',
			(int) 62 => 'Ovary',
			(int) 63 => 'Testis',
			(int) 64 => 'Adipose',
			(int) 65 => 'Adrenal',
			(int) 66 => 'Brain',
			(int) 67 => 'Breast',
			(int) 68 => 'Colon',
			(int) 69 => 'Heart',
			(int) 70 => 'Kidney',
			(int) 71 => 'Liver',
			(int) 72 => 'Lung',
			(int) 73 => 'Muscle',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_00032S_0002',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '123224841',
		'seq_end' => '123236209',
		'region_length' => '11368',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000033862-ENSMUSG00000033594'
	)
)
$gene_el = array(
	'ENST00000615131' => array(
		'Adipose' => array(
			'average_FPKM' => '0.220',
			'stddev_FPKM' => '0.00'
		),
		'Adrenal' => array(
			'average_FPKM' => '1.378',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.433',
			'stddev_FPKM' => '0.27'
		),
		'Breast' => array(
			'average_FPKM' => '0.467',
			'stddev_FPKM' => '0.00'
		),
		'Colon' => array(
			'average_FPKM' => '0.365',
			'stddev_FPKM' => '0.11'
		),
		'Heart' => array(
			'average_FPKM' => '0.520',
			'stddev_FPKM' => '0.00'
		),
		'Kidney' => array(
			'average_FPKM' => '0.999',
			'stddev_FPKM' => '0.00'
		),
		'Liver' => array(
			'average_FPKM' => '0.254',
			'stddev_FPKM' => '0.14'
		),
		'Lung' => array(
			'average_FPKM' => '0.768',
			'stddev_FPKM' => '0.00'
		),
		'Muscle' => array(
			'average_FPKM' => '1.233',
			'stddev_FPKM' => '0.00'
		),
		'Ovary' => array(
			'average_FPKM' => '0.843',
			'stddev_FPKM' => '0.39'
		),
		'Placenta' => array(
			'average_FPKM' => '0.253',
			'stddev_FPKM' => '0.02'
		),
		'Testis' => array(
			'average_FPKM' => '1.614',
			'stddev_FPKM' => '0.71'
		)
	)
)
$gene_key = 'ENSG00000275734'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.220',
		'stddev_FPKM' => '0.00'
	),
	'Adrenal' => array(
		'average_FPKM' => '1.378',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.433',
		'stddev_FPKM' => '0.27'
	),
	'Breast' => array(
		'average_FPKM' => '0.467',
		'stddev_FPKM' => '0.00'
	),
	'Colon' => array(
		'average_FPKM' => '0.365',
		'stddev_FPKM' => '0.11'
	),
	'Heart' => array(
		'average_FPKM' => '0.520',
		'stddev_FPKM' => '0.00'
	),
	'Kidney' => array(
		'average_FPKM' => '0.999',
		'stddev_FPKM' => '0.00'
	),
	'Liver' => array(
		'average_FPKM' => '0.254',
		'stddev_FPKM' => '0.14'
	),
	'Lung' => array(
		'average_FPKM' => '0.768',
		'stddev_FPKM' => '0.00'
	),
	'Muscle' => array(
		'average_FPKM' => '1.233',
		'stddev_FPKM' => '0.00'
	),
	'Ovary' => array(
		'average_FPKM' => '0.843',
		'stddev_FPKM' => '0.39'
	),
	'Placenta' => array(
		'average_FPKM' => '0.253',
		'stddev_FPKM' => '0.02'
	),
	'Testis' => array(
		'average_FPKM' => '1.614',
		'stddev_FPKM' => '0.71'
	)
)
$tran_key = 'ENST00000615131'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSMUSG00000033862-ENSMUSG00000033594		CGP	10090	8:123224841-123236209
Gene		Transcript	Position	Biotype

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Homo sapiens Ensembl (GRCh38)

Mus musculus Ensembl (GRCm38)

Expression Patterns

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