C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0003SD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000219607-ENSG00000214113 CGP 9606 6:5084581-5260950
GeneTranscriptPositionBiotype
ENSG00000214113 (LYRM4)
LYR motif containing 4
ENST00000330636 (LYRM4-001) 5102593-5260939 protein_coding
ENST00000455814 (LYRM4-002) 5236284-5260721 processed_transcript
ENST00000458438 (LYRM4-003) 5108728-5132894 processed_transcript
ENST00000463032 (LYRM4-007) 5108473-5216738 nonsense_mediated_decay
ENST00000464010 (LYRM4-006) 5108423-5260733 protein_coding
ENST00000468929 (LYRM4-004) 5108419-5260742 protein_coding
ENST00000480566 (LYRM4-005) 5136174-5260742 protein_coding
ENST00000500576 (LYRM4-201) 5186600-5260950 protein_coding
ENST00000606472 (LYRM4-008) 5103629-5109234 processed_transcript
ENSG00000219607 (PPP1R3G)
protein phosphatase 1, regulatory subunit 3G
ENST00000405617 (PPP1R3G-001) 5084581-5089487 protein_coding
CIL_0003SD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050423-ENSMUSG00000046573 CGP 10090 13:35958839-36117357
GeneTranscriptPositionBiotype
ENSMUSG00000046573 (Lyrm4)
LYR motif containing 4
ENSMUST00000053265 (Lyrm4-201) 35978797-36117357 protein_coding
ENSMUSG00000050423 (Ppp1r3g)
protein phosphatase 1, regulatory (inhibitor) subunit 3G
ENSMUST00000132661 (Ppp1r3g-001) 35967853-35970388 protein_coding
ENSMUST00000172766 (Ppp1r3g-002) 35958839-35968324 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SD_0001ENSG00000214113ENST00000330636ENST00000455814ENST00000458438ENST00000463032ENST00000464010ENST00000468929ENST00000480566ENST00000500576ENST00000606472ENSG00000219607ENST00000405617CIL_0003SD_0002ENSMUSG00000046573ENSMUST00000053265ENSMUSG00000050423ENSMUST00000132661ENSMUST00000172766
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SD_0001ENSG00000214113ENST00000330636ENST00000458438ENST00000463032ENST00000464010ENST00000468929ENST00000480566ENST00000500576ENST00000606472ENSG00000219607ENST00000405617CIL_0003SD_0002ENSMUSG00000046573ENSMUST00000053265ENSMUSG00000050423ENSMUST00000132661ENSMUST00000172766
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000214113 ENST00000330636 0.433±0.00 0.801±0.00 0.170±0.00 0.674±0.14 0.325±0.05 0.307±0.23 0.178±0.06 0.225±0.09 0.236±0.14 0.242±0.03 0.195±0.00 1.032±0.55 0.664±0.27 0.841±0.42
ENST00000455814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458438 7.317±0.00 N/A N/A 2.214±0.00 2.186±0.30 5.865±0.00 0.852±0.51 N/A 1.230±0.00 N/A N/A N/A 3.792±1.42 N/A
ENST00000463032 N/A N/A N/A N/A N/A 0.355±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464010 3.895±0.00 1.907±0.00 N/A 2.863±1.96 1.850±0.00 7.109±0.00 0.808±0.55 3.663±0.00 1.060±0.48 5.073±0.00 1.351±0.00 11.360±5.96 5.002±1.94 8.047±0.54
ENST00000468929 2.506±0.00 7.929±0.00 0.389±0.00 4.422±0.00 4.858±0.00 N/A 2.100±0.00 2.868±0.00 2.879±0.00 1.743±1.38 1.940±0.00 4.196±0.00 5.535±0.27 8.893±0.00
ENST00000480566 N/A N/A N/A N/A N/A N/A N/A N/A 1.363±0.00 N/A N/A N/A N/A N/A
ENST00000500576 N/A 3.806±0.00 N/A 4.060±0.00 2.204±0.00 N/A 2.123±1.07 1.755±0.23 1.804±0.00 2.659±1.08 1.455±1.02 27.040±24.34 10.165±8.81 26.142±21.36
ENST00000606472 N/A N/A 0.366±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000219607 ENST00000405617 0.872±0.00 0.362±0.00 0.118±0.00 0.400±0.00 0.362±0.29 0.767±0.42 1.065±0.65 0.603±0.35 0.311±0.20 0.116±0.05 0.113±0.01 0.323±0.13 0.971±0.35 0.435±0.34
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000046573 ENSMUST00000053265 3.050±0.26 1.585±0.40 4.662±0.17 7.247±0.47 1.664±0.63 1.344±0.55 3.621±0.16 6.325±0.48 5.616±3.64 2.963±0.47 2.185±0.21 3.873±0.83 7.005±2.26 1.384±0.00
ENSMUSG00000050423 ENSMUST00000132661 0.035±0.02 0.072±0.04 0.030±0.01 0.424±0.40 0.035±0.02 N/A 0.064±0.02 0.036±0.00 0.438±0.79 0.051±0.01 0.065±0.00 0.084±0.04 3.727±1.48 0.018±0.01
ENSMUST00000172766 N/A N/A N/A N/A N/A N/A N/A N/A 0.216±0.00 N/A N/A N/A N/A N/A

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