C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LYR motif containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000214113 LYRM4 9606 - 6:5102593-5260950 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330636 LYRM4-001 5102593-5260939 protein_coding
  ENST00000455814 LYRM4-002 5236284-5260721 processed_transcript
  ENST00000458438 LYRM4-003 5108728-5132894 processed_transcript
  ENST00000463032 LYRM4-007 5108473-5216738 nonsense_mediated_decay
  ENST00000464010 LYRM4-006 5108423-5260733 protein_coding
  ENST00000468929 LYRM4-004 5108419-5260742 protein_coding
  ENST00000480566 LYRM4-005 5136174-5260742 protein_coding
  ENST00000500576 LYRM4-201 5186600-5260950 protein_coding
  ENST00000606472 LYRM4-008 5103629-5109234 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330636ENST00000458438ENST00000463032ENST00000464010ENST00000468929ENST00000480566ENST00000500576ENST00000606472
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330636 0.433±0.00 0.801±0.00 0.170±0.00 0.674±0.14 0.325±0.05 0.307±0.23 0.178±0.06 0.225±0.09 0.236±0.14 0.242±0.03 0.195±0.00 1.032±0.55 0.664±0.27 0.841±0.42
ENST00000458438 7.317±0.00 N/A N/A 2.214±0.00 2.186±0.30 5.865±0.00 0.852±0.51 N/A 1.230±0.00 N/A N/A N/A 3.792±1.42 N/A
ENST00000463032 N/A N/A N/A N/A N/A 0.355±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464010 3.895±0.00 1.907±0.00 N/A 2.863±1.96 1.850±0.00 7.109±0.00 0.808±0.55 3.663±0.00 1.060±0.48 5.073±0.00 1.351±0.00 11.360±5.96 5.002±1.94 8.047±0.54
ENST00000468929 2.506±0.00 7.929±0.00 0.389±0.00 4.422±0.00 4.858±0.00 N/A 2.100±0.00 2.868±0.00 2.879±0.00 1.743±1.38 1.940±0.00 4.196±0.00 5.535±0.27 8.893±0.00
ENST00000480566 N/A N/A N/A N/A N/A N/A N/A N/A 1.363±0.00 N/A N/A N/A N/A N/A
ENST00000500576 N/A 3.806±0.00 N/A 4.060±0.00 2.204±0.00 N/A 2.123±1.07 1.755±0.23 1.804±0.00 2.659±1.08 1.455±1.02 27.040±24.34 10.165±8.81 26.142±21.36
ENST00000606472 N/A N/A 0.366±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SD CIL_0003SD_0001 CGP 6:5084581-5260950
CIL_00005I CIL_00005I_0001 CGP 6:5102593-5771580

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005739 IEA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078352 lyrm4 LYR motif containing 4 protein_coding Danio_rerio
ENSMUSG00000046573 Lyrm4 LYR motif containing 4 protein_coding Mus_musculus

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