C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00056D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000087448-ENSG00000087494 CGP 9606 12:27780020-27972705
GeneTranscriptPositionBiotype
ENSG00000087448 (KLHL42)
kelch-like family member 42 		ENST00000381271 (KLHL42-001) 27780020-27803040 protein_coding
ENST00000539176 (KLHL42-003) 27780048-27798156 nonsense_mediated_decay
ENST00000540301 (KLHL42-005) 27787635-27791926 retained_intron
ENST00000543254 (KLHL42-004) 27780867-27792143 protein_coding
ENSG00000087494 (PTHLH)
parathyroid hormone-like hormone 		ENST00000201015 (PTHLH-201) 27962322-27971983 protein_coding
ENST00000395868 (PTHLH-002) 27962587-27970047 protein_coding
ENST00000395872 (PTHLH-202) 27958084-27971970 protein_coding
ENST00000534890 (PTHLH-006) 27963563-27970134 protein_coding
ENST00000535992 (PTHLH-003) 27962328-27970349 protein_coding
ENST00000538310 (PTHLH-004) 27961668-27969494 protein_coding
ENST00000539239 (PTHLH-008) 27958270-27969561 protein_coding
ENST00000542963 (PTHLH-007) 27963356-27970277 protein_coding
ENST00000545234 (PTHLH-001) 27958090-27972705 protein_coding
ENSG00000201612 (RN7SKP15)
RNA, 7SK small nuclear pseudogene 15 		ENST00000364742 (RN7SKP15-201) 27806082-27806390 misc_RNA
ENSG00000257042 (RP11-993B23.3)
 ENST00000538113 (RP11-993B23.3-001) 27958517-27969813 antisense
ENSG00000274075 (uc_338)
TUC338 		ENST00000616635 (uc_338.1-203) 27824207-27824382 misc_RNA
CIL_00056D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040102-ENSMUSG00000048776 CGP 10090 6:147091379-147264167
GeneTranscriptPositionBiotype
ENSMUSG00000040102 (Klhl42)
kelch-like 42 		ENSMUST00000036003 (Klhl42-001) 147091379-147112778 protein_coding
ENSMUSG00000048776 (Pthlh)
parathyroid hormone-like peptide 		ENSMUST00000052296 (Pthlh-001) 147252101-147264167 protein_coding
ENSMUSG00000080760 (Gm7571)
predicted gene 7571 		ENSMUST00000120252 (Gm7571-001) 147173481-147175116 processed_pseudogene
ENSMUSG00000085600 (E330012B07Rik)
RIKEN cDNA E330012B07 gene 		ENSMUST00000133471 (E330012B07Rik-002) 147180262-147202764 lincRNA
ENSMUST00000151979 (E330012B07Rik-001) 147180244-147208285 lincRNA
ENSMUSG00000086021 (Gm15767)
predicted gene 15767 		ENSMUST00000153521 (Gm15767-002) 147242723-147243793 lincRNA
ENSMUST00000153786 (Gm15767-001) 147242527-147243801 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00056D_0001ENSG00000087448ENST00000381271ENST00000539176ENST00000540301ENST00000543254ENSG00000087494ENST00000201015ENST00000395868ENST00000395872ENST00000534890ENST00000535992ENST00000538310ENST00000539239ENST00000542963ENST00000545234ENSG00000201612ENST00000364742ENSG00000257042ENST00000538113ENSG00000274075ENST00000616635CIL_00056D_0002ENSMUSG00000040102ENSMUST00000036003ENSMUSG00000048776ENSMUST00000052296ENSMUSG00000080760ENSMUST00000120252ENSMUSG00000085600ENSMUST00000133471ENSMUST00000151979ENSMUSG00000086021ENSMUST00000153521ENSMUST00000153786
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00056D_0001ENSG00000087448ENST00000381271ENST00000539176ENST00000543254ENSG00000087494ENST00000201015ENST00000395868ENST00000395872ENST00000535992ENST00000538310ENST00000539239ENST00000542963ENST00000545234ENSG00000201612ENST00000364742ENSG00000257042ENST00000538113ENSG00000274075ENST00000616635CIL_00056D_0002ENSMUSG00000040102ENSMUST00000036003ENSMUSG00000048776ENSMUST00000052296ENSMUSG00000080760ENSMUST00000120252ENSMUSG00000085600ENSMUST00000133471ENSMUST00000151979ENSMUSG00000086021ENSMUST00000153521ENSMUST00000153786
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087448 ENST00000381271 2.804±0.00 N/A N/A 4.368±1.93 1.114±0.00 2.300±1.54 0.612±0.47 2.859±1.95 2.857±1.91 1.138±0.39 0.184±0.14 2.427±1.89 3.681±1.68 3.494±1.19
ENST00000539176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.951±0.37 N/A N/A N/A
ENST00000540301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543254 N/A N/A N/A N/A N/A 6.116±0.00 N/A N/A N/A 5.011±0.00 0.667±0.00 N/A N/A N/A
ENSG00000087494 ENST00000201015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 0.647±0.00 N/A N/A
ENST00000395868 N/A N/A 0.036±0.00 0.421±0.00 0.178±0.00 N/A 0.095±0.00 0.029±0.00 1.161±0.00 0.223±0.01 N/A 1.301±0.78 0.434±0.12 N/A
ENST00000395872 0.043±0.00 0.014±0.00 N/A 0.234±0.03 0.610±0.00 0.249±0.04 N/A N/A N/A 0.492±0.00 N/A 1.238±0.00 0.135±0.00 N/A
ENST00000534890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535992 N/A N/A N/A 0.244±0.00 N/A 0.272±0.13 N/A N/A N/A 0.516±0.00 0.116±0.00 0.340±0.00 0.758±0.00 0.269±0.00
ENST00000538310 N/A 0.036±0.00 N/A N/A N/A 0.963±0.00 N/A N/A N/A 0.395±0.00 N/A N/A 0.409±0.17 N/A
ENST00000539239 N/A N/A N/A 0.598±0.42 0.850±0.00 0.630±0.00 0.096±0.00 0.093±0.00 N/A N/A 0.196±0.00 0.537±0.23 1.194±0.60 0.575±0.00
ENST00000542963 N/A 0.140±0.00 N/A 0.620±0.26 0.550±0.00 N/A N/A N/A N/A N/A N/A 2.918±1.53 N/A 0.672±0.15
ENST00000545234 N/A N/A N/A N/A N/A N/A N/A N/A 0.384±0.00 N/A N/A 0.924±0.00 0.278±0.00 N/A
ENSG00000201612 ENST00000364742 N/A N/A N/A 0.086±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257042 ENST00000538113 N/A N/A N/A N/A N/A N/A N/A 0.403±0.00 N/A N/A N/A N/A N/A 0.533±0.02
ENSG00000274075 ENST00000616635 N/A N/A N/A 0.147±0.00 N/A N/A N/A N/A N/A N/A N/A 4.071±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040102 ENSMUST00000036003 8.226±1.85 11.018±3.60 9.318±0.21 2.927±1.37 7.642±2.33 5.695±0.62 1.802±0.02 6.433±0.55 2.348±0.38 6.613±1.27 0.411±0.11 12.276±4.66 3.457±0.96 0.694±0.31
ENSMUSG00000048776 ENSMUST00000052296 1.450±0.64 0.211±0.12 55.427±14.28 0.947±0.28 0.799±0.48 1.158±0.18 0.471±0.14 0.153±0.06 0.010±0.01 0.785±0.24 1.697±0.74 0.781±0.26 0.513±0.51 0.081±0.04
ENSMUSG00000080760 ENSMUST00000120252 0.058±0.00 N/A 0.009±0.00 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 0.142±0.14 N/A
ENSMUSG00000085600 ENSMUST00000133471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A 0.064±0.00
ENSMUST00000151979 N/A N/A 0.003±0.00 0.011±0.00 N/A N/A 0.013±0.00 N/A N/A N/A N/A 0.145±0.08 N/A 0.014±0.00
ENSMUSG00000086021 ENSMUST00000153521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.251±0.00 5.054±3.73 0.122±0.00 1.140±0.60
ENSMUST00000153786 0.188±0.10 2.098±0.82 0.045±0.03 0.111±0.00 0.225±0.10 N/A N/A 0.168±0.07 N/A 0.115±0.00 N/A 1.287±0.94 0.078±0.03 1.718±0.94

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