C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00058C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000089689-ENSDARG00000054572 CGP 7955 15:30813528-30860512
GeneTranscriptPositionBiotype
ENSDARG00000030479 (hmgb1b)
high-mobility group box 1b 		ENSDART00000108983 (hmgb1b-201) 30810620-30814116 protein_coding
ENSDART00000153978 (hmgb1b-005) 30811614-30812370 protein_coding
ENSDART00000156047 (hmgb1b-001) 30810617-30814135 protein_coding
ENSDART00000156072 (hmgb1b-004) 30811097-30814116 protein_coding
ENSDART00000156335 (hmgb1b-003) 30811758-30814066 retained_intron
ENSDART00000156427 (hmgb1b-002) 30810955-30814110 protein_coding
ENSDARG00000054572 (si:dkey-1m11.8)
WD repeat domain 49 		ENSDART00000076793 (si:dkey-1m11.8-201) 30833199-30859752 protein_coding
ENSDART00000154456 (si:dkey-1m11.8-001) 30823777-30860512 protein_coding
ENSDARG00000089689 (tex26)
testis expressed 26 		ENSDART00000129228 (tex26-201) 30818034-30819948 protein_coding
ENSDART00000156471 (tex26-001) 30813528-30820669 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00058C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029660-ENSMUSG00000029658 CGP 10090 5:149439706-149611894
GeneTranscriptPositionBiotype
ENSMUSG00000029658 (Wdr95)
WD40 repeat domain 95 		ENSMUST00000110502 (Wdr95-001) 149528679-149611894 protein_coding
ENSMUST00000121108 (Wdr95-007) 149529733-149611894 protein_coding
ENSMUST00000123352 (Wdr95-005) 149529733-149564539 retained_intron
ENSMUST00000125103 (Wdr95-002) 149529691-149599907 nonsense_mediated_decay
ENSMUST00000130653 (Wdr95-004) 149536607-149563438 retained_intron
ENSMUST00000138690 (Wdr95-006) 149581778-149588216 retained_intron
ENSMUST00000152090 (Wdr95-003) 149529685-149563438 retained_intron
ENSMUSG00000029660 (Tex26)
testis expressed 26 		ENSMUST00000031667 (Tex26-201) 149439706-149470620 protein_coding
ENSMUSG00000082959 (Gm2566)
predicted gene 2566 		ENSMUST00000122249 (Gm2566-001) 149502507-149503047 processed_pseudogene
ENSMUSG00000086744 (Gm15997)
predicted gene 15997 		ENSMUST00000156774 (Gm15997-001) 149489056-149538030 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058C_0001ENSDARG00000030479ENSDART00000108983ENSDART00000153978ENSDART00000156047ENSDART00000156072ENSDART00000156335ENSDART00000156427ENSDARG00000054572ENSDART00000076793ENSDART00000154456ENSDARG00000089689ENSDART00000129228ENSDART00000156471CIL_00058C_0002ENSMUSG00000029658ENSMUST00000110502ENSMUST00000121108ENSMUST00000123352ENSMUST00000125103ENSMUST00000130653ENSMUST00000138690ENSMUST00000152090ENSMUSG00000029660ENSMUST00000031667ENSMUSG00000082959ENSMUST00000122249ENSMUSG00000086744ENSMUST00000156774
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058C_0001ENSDARG00000030479ENSDART00000108983ENSDART00000156047ENSDART00000156427ENSDARG00000054572ENSDART00000076793ENSDART00000154456ENSDARG00000089689ENSDART00000129228ENSDART00000156471CIL_00058C_0002ENSMUSG00000029658ENSMUST00000110502ENSMUST00000121108ENSMUST00000125103ENSMUST00000138690ENSMUST00000152090ENSMUSG00000029660ENSMUST00000031667ENSMUSG00000082959ENSMUST00000122249ENSMUSG00000086744ENSMUST00000156774
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030479 ENSDART00000108983 N/A N/A N/A 34.791±24.08 N/A N/A 59.652±31.16 36.593±24.43 0.422±0.00 N/A N/A N/A N/A N/A
ENSDART00000153978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156047 N/A N/A N/A 110.097±59.58 N/A N/A 20.344±15.13 30.530±0.00 N/A N/A 11.591±0.00 N/A N/A N/A
ENSDART00000156072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156427 N/A N/A N/A N/A N/A N/A 6.575±0.00 N/A 1.020±0.00 N/A 5.599±0.00 N/A N/A N/A
ENSDARG00000054572 ENSDART00000076793 N/A N/A N/A 0.085±0.00 N/A N/A 0.041±0.00 N/A 0.032±0.00 N/A N/A N/A N/A N/A
ENSDART00000154456 N/A N/A N/A 0.118±0.07 N/A N/A 0.031±0.00 1.195±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000089689 ENSDART00000129228 N/A N/A N/A N/A N/A N/A 1.111±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156471 N/A N/A N/A 0.060±0.00 N/A N/A 0.032±0.00 0.069±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029658 ENSMUST00000110502 0.068±0.02 N/A 0.034±0.00 N/A 0.150±0.05 N/A 0.143±0.01 0.029±0.01 0.009±0.00 N/A 0.039±0.00 0.782±0.05 0.010±0.01 0.413±0.05
ENSMUST00000121108 N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A 0.397±0.26 N/A 0.936±0.18 N/A 0.241±0.00
ENSMUST00000123352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125103 N/A 0.059±0.00 N/A N/A 0.040±0.00 0.025±0.00 0.038±0.00 0.019±0.01 0.014±0.00 N/A 0.020±0.00 0.293±0.00 0.016±0.00 N/A
ENSMUST00000130653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.238±0.01 N/A N/A N/A
ENSMUST00000152090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.261±0.00 N/A N/A 8.054±2.42
ENSMUSG00000029660 ENSMUST00000031667 0.246±0.05 0.130±0.01 0.105±0.00 0.221±0.07 N/A 0.098±0.00 N/A N/A 0.059±0.05 0.686±0.25 0.034±0.01 0.549±0.39 0.073±0.04 13.116±4.89
ENSMUSG00000082959 ENSMUST00000122249 N/A N/A N/A 0.158±0.12 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086744 ENSMUST00000156774 N/A N/A 0.029±0.02 0.055±0.00 N/A N/A 0.019±0.00 N/A N/A 0.035±0.02 N/A 0.131±0.05 N/A 0.022±0.00

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