C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005A0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000038305-ENSDARG00000068683 CGP 7955 9:19622379-19676003
GeneTranscriptPositionBiotype
ENSDARG00000038305 (VGLL3)
vestigial-like family member 3 		ENSDART00000099440 (VGLL3-201) 19622379-19634093 protein_coding
ENSDARG00000068683 (chmp2ba)
chromatin modifying protein 2Ba 		ENSDART00000055866 (chmp2ba-001) 19657654-19676003 protein_coding
ENSDARG00000091617 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000126450 (5S_rRNA.1944-201) 19647399-19647513 rRNA
ENSDARG00000093471 (si:ch211-224m9.4)
si:ch211-224m9.4 		ENSDART00000143489 (si:ch211-224m9.4-001) 19645478-19658995 lincRNA
CIL_0005A0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000206538-ENSG00000083937 CGP 9606 3:86937969-87255548
GeneTranscriptPositionBiotype
ENSG00000083937 (CHMP2B)
charged multivesicular body protein 2B 		ENST00000263780 (CHMP2B-001) 87227285-87255499 protein_coding
ENST00000466696 (CHMP2B-005) 87253049-87253913 retained_intron
ENST00000471660 (CHMP2B-002) 87227271-87255548 protein_coding
ENST00000472024 (CHMP2B-003) 87227309-87253470 protein_coding
ENST00000494980 (CHMP2B-004) 87227302-87254224 protein_coding
ENSG00000241293 (PPATP1)
phosphoribosyl pyrophosphate amidotransferase pseudogene 1 		ENST00000496669 (PPATP1-001) 87051192-87052738 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005A0_0001ENSDARG00000038305ENSDART00000099440ENSDARG00000068683ENSDART00000055866ENSDARG00000091617ENSDART00000126450ENSDARG00000093471ENSDART00000143489CIL_0005A0_0002ENSG00000083937ENST00000263780ENST00000466696ENST00000471660ENST00000472024ENST00000494980ENSG00000241293ENST00000496669
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005A0_0001ENSDARG00000038305ENSDART00000099440ENSDARG00000068683ENSDART00000055866ENSDARG00000091617ENSDART00000126450ENSDARG00000093471ENSDART00000143489CIL_0005A0_0002ENSG00000083937ENST00000263780ENST00000471660ENST00000472024ENST00000494980ENSG00000241293ENST00000496669
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000038305 ENSDART00000099440 N/A N/A N/A 0.328±0.09 N/A N/A 1.139±0.74 0.963±0.09 N/A N/A 0.755±0.00 N/A N/A N/A
ENSDARG00000068683 ENSDART00000055866 N/A N/A N/A 0.882±0.00 N/A N/A 0.061±0.00 0.961±0.00 N/A N/A 1.021±0.00 N/A N/A N/A
ENSDARG00000091617 ENSDART00000126450 N/A N/A N/A 84.526±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000093471 ENSDART00000143489 N/A N/A N/A 2.869±1.19 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000083937 ENST00000263780 7.741±0.00 8.373±0.00 1.987±0.00 9.571±2.08 6.502±1.15 4.983±1.05 4.920±2.32 7.184±2.94 5.672±0.57 7.473±1.44 1.980±0.57 11.871±3.06 8.620±1.18 8.465±2.56
ENST00000466696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471660 N/A N/A N/A N/A N/A 2.556±0.00 N/A N/A N/A N/A N/A 3.072±0.00 2.991±0.00 N/A
ENST00000472024 N/A N/A N/A N/A 3.836±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494980 3.847±0.00 4.739±0.00 N/A 7.712±0.00 3.605±0.00 3.805±0.00 3.682±0.00 8.438±0.00 N/A 5.413±0.00 N/A N/A 4.124±0.00 6.148±0.00
ENSG00000241293 ENST00000496669 N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A 0.014±0.00 0.015±0.00 0.028±0.01

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