C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005FA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137804-ENSG00000137806 CGP 9606 15:41332694-41402519
GeneTranscriptPositionBiotype
ENSG00000137804 (NUSAP1)
nucleolar and spindle associated protein 1 		ENST00000260359 (NUSAP1-002) 41332694-41381050 protein_coding
ENST00000414849 (NUSAP1-001) 41332871-41381050 protein_coding
ENST00000450592 (NUSAP1-005) 41332871-41380263 protein_coding
ENST00000557840 (NUSAP1-010) 41342396-41375751 nonsense_mediated_decay
ENST00000558123 (NUSAP1-003) 41332694-41380747 processed_transcript
ENST00000558582 (NUSAP1-012) 41332883-41351986 processed_transcript
ENST00000559046 (NUSAP1-013) 41332855-41351086 nonsense_mediated_decay
ENST00000559596 (NUSAP1-006) 41332871-41380402 protein_coding
ENST00000559659 (NUSAP1-009) 41332899-41349405 retained_intron
ENST00000560177 (NUSAP1-007) 41332913-41381050 protein_coding
ENST00000560318 (NUSAP1-014) 41365747-41377288 retained_intron
ENST00000560747 (NUSAP1-008) 41332886-41381050 protein_coding
ENST00000560898 (NUSAP1-011) 41351102-41377272 nonsense_mediated_decay
ENSG00000137806 (NDUFAF1)
NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 		ENST00000260361 (NDUFAF1-001) 41387349-41402444 protein_coding
ENST00000558719 (NDUFAF1-004) 41396487-41402442 protein_coding
ENST00000559127 (NDUFAF1-002) 41387494-41402459 nonsense_mediated_decay
ENST00000560978 (NDUFAF1-003) 41394991-41402519 protein_coding
ENSG00000259396 (RP11-16O9.2)
 ENST00000559959 (RP11-16O9.2-001) 41343080-41344225 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0005FA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027306-ENSMUSG00000027305 CGP 10090 2:119618298-119662827
GeneTranscriptPositionBiotype
ENSMUSG00000027305 (Ndufaf1)
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 		ENSMUST00000028768 (Ndufaf1-201) 119655451-119662798 protein_coding
ENSMUST00000110801 (Ndufaf1-001) 119655446-119662820 protein_coding
ENSMUST00000110802 (Ndufaf1-002) 119655446-119662821 protein_coding
ENSMUST00000131596 (Ndufaf1-003) 119660438-119662827 processed_transcript
ENSMUST00000154127 (Ndufaf1-004) 119660258-119662812 processed_transcript
ENSMUSG00000027306 (Nusap1)
nucleolar and spindle associated protein 1 		ENSMUST00000028771 (Nusap1-002) 119618717-119651244 protein_coding
ENSMUST00000068225 (Nusap1-001) 119618298-119650160 protein_coding
ENSMUST00000125491 (Nusap1-004) 119618729-119630505 processed_transcript
ENSMUST00000153036 (Nusap1-003) 119618694-119635587 processed_transcript
ENSMUSG00000072980 (Oip5)
Opa interacting protein 5 		ENSMUST00000110805 (Oip5-002) 119609512-119618469 retained_intron
ENSMUST00000123818 (Oip5-001) 119609971-119618469 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005FA_0001ENSG00000137804ENST00000260359ENST00000414849ENST00000450592ENST00000557840ENST00000558123ENST00000558582ENST00000559046ENST00000559596ENST00000559659ENST00000560177ENST00000560318ENST00000560747ENST00000560898ENSG00000137806ENST00000260361ENST00000558719ENST00000559127ENST00000560978ENSG00000259396ENST00000559959CIL_0005FA_0002ENSMUSG00000027305ENSMUST00000028768ENSMUST00000110801ENSMUST00000110802ENSMUST00000131596ENSMUST00000154127ENSMUSG00000027306ENSMUST00000028771ENSMUST00000068225ENSMUST00000125491ENSMUST00000153036ENSMUSG00000072980ENSMUST00000110805ENSMUST00000123818
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005FA_0001ENSG00000137804ENST00000260359ENST00000414849ENST00000557840ENST00000558123ENST00000558582ENST00000559046ENST00000559596ENST00000559659ENST00000560177ENST00000560318ENST00000560747ENST00000560898ENSG00000137806ENST00000260361ENST00000558719ENST00000559127ENST00000560978ENSG00000259396ENST00000559959CIL_0005FA_0002ENSMUSG00000027305ENSMUST00000028768ENSMUST00000110801ENSMUST00000110802ENSMUST00000154127ENSMUSG00000027306ENSMUST00000028771ENSMUST00000068225ENSMUSG00000072980ENSMUST00000110805ENSMUST00000123818
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137804 ENST00000260359 N/A N/A N/A N/A N/A N/A N/A 0.398±0.00 N/A N/A N/A 1.365±0.68 1.661±0.00 2.068±0.00
ENST00000414849 N/A N/A N/A N/A 1.197±0.00 2.770±0.00 N/A N/A N/A 0.613±0.00 N/A 4.040±2.46 3.664±1.85 3.957±1.24
ENST00000450592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.479±0.00 N/A N/A N/A
ENST00000558123 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.453±0.00 N/A N/A N/A
ENST00000558582 N/A N/A 0.352±0.00 N/A N/A 2.278±0.00 N/A N/A N/A N/A 0.618±0.00 N/A N/A N/A
ENST00000559046 N/A 1.237±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559596 N/A N/A 0.263±0.00 0.294±0.00 1.880±0.00 1.045±0.00 0.131±0.00 0.330±0.00 N/A 0.871±0.00 N/A 2.600±0.00 1.196±0.00 2.280±0.00
ENST00000559659 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.831±0.00 N/A N/A N/A N/A
ENST00000560177 N/A N/A N/A N/A 0.403±0.00 N/A N/A N/A 0.068±0.00 N/A N/A 1.361±0.00 1.284±0.54 N/A
ENST00000560318 1.221±0.00 0.964±0.00 N/A N/A N/A N/A 0.475±0.00 2.286±0.00 N/A N/A N/A N/A N/A N/A
ENST00000560747 N/A N/A N/A N/A N/A 0.221±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560898 0.729±0.00 1.337±0.00 N/A 0.219±0.00 0.769±0.00 N/A N/A N/A N/A N/A 0.450±0.00 N/A N/A N/A
ENSG00000137806 ENST00000260361 1.239±0.00 N/A 1.150±0.00 2.412±0.00 2.828±0.00 2.764±2.06 18.733±0.00 N/A 2.876±0.00 N/A N/A 1.903±1.20 3.358±1.07 15.774±2.59
ENST00000558719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.624±0.00 7.507±0.00 36.781±0.00
ENST00000559127 1.250±0.00 2.813±0.00 N/A N/A N/A N/A N/A 2.068±0.00 N/A 0.470±0.00 N/A 0.552±0.00 N/A N/A
ENST00000560978 N/A N/A 0.666±0.00 2.080±0.00 0.960±0.00 0.849±0.00 3.219±0.00 N/A N/A N/A 2.808±0.00 2.046±0.59 5.272±3.84 23.377±0.00
ENSG00000259396 ENST00000559959 0.026±0.00 0.026±0.00 N/A 0.027±0.00 N/A N/A N/A N/A N/A 0.364±0.00 N/A 0.070±0.00 N/A 0.143±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027305 ENSMUST00000028768 1.330±0.35 2.005±0.80 1.610±0.36 1.446±0.17 2.106±0.52 1.828±0.31 4.315±1.43 3.295±0.57 3.254±1.23 1.172±0.47 7.830±1.89 2.066±0.46 3.098±0.67 2.392±0.98
ENSMUST00000110801 2.395±0.08 2.076±0.00 1.508±0.43 1.432±0.52 1.323±0.32 N/A 3.197±2.43 3.669±0.33 3.124±1.22 1.216±0.63 3.153±0.33 2.085±0.75 1.375±0.68 0.631±0.15
ENSMUST00000110802 2.943±0.96 0.729±0.15 4.781±0.37 3.214±1.88 2.739±1.83 1.802±0.00 5.159±0.23 2.848±1.27 4.417±1.82 1.175±0.24 9.719±1.48 5.040±4.28 7.788±3.00 1.499±0.57
ENSMUST00000131596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154127 N/A N/A N/A N/A 1.380±0.28 0.732±0.00 N/A N/A N/A 0.546±0.00 N/A 1.241±0.61 N/A N/A
ENSMUSG00000027306 ENSMUST00000028771 0.435±0.32 0.203±0.00 0.197±0.00 3.539±0.29 0.407±0.17 0.800±0.25 0.191±0.00 0.116±0.07 3.832±3.71 0.227±0.11 0.154±0.08 1.073±0.42 0.179±0.04 N/A
ENSMUST00000068225 0.110±0.00 0.193±0.05 0.637±0.01 4.418±3.10 0.347±0.16 0.902±0.28 0.088±0.01 0.141±0.06 16.782±18.16 0.197±0.13 0.094±0.04 1.855±1.09 6.297±5.69 2.476±1.16
ENSMUST00000125491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000072980 ENSMUST00000110805 0.314±0.14 0.475±0.05 0.379±0.00 N/A 0.303±0.12 N/A 0.057±0.00 0.119±0.01 0.049±0.01 N/A 0.089±0.04 0.577±0.00 1.533±1.38 N/A
ENSMUST00000123818 1.575±0.59 1.936±0.46 0.711±0.23 N/A 0.857±0.36 2.159±0.82 0.129±0.00 0.372±0.13 0.201±0.07 0.529±0.12 0.174±0.00 4.141±1.08 3.387±2.23 4.952±0.51

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