C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005N4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170927-ENSG00000112115 CGP 9606 6:51615300-52190638
GeneTranscriptPositionBiotype
ENSG00000112115 (IL17A)
interleukin 17A 		ENST00000340057 (IL17A-001) 52186387-52190638 protein_coding
ENSG00000170927 (PKHD1)
polycystic kidney and hepatic disease 1 (autosomal recessive) 		ENST00000340994 (PKHD1-002) 51720849-52087610 protein_coding
ENST00000371117 (PKHD1-001) 51615300-52087625 protein_coding
ENSG00000225613 (LINCMD1)
long intergenic non-protein coding RNA, muscle differentiation 1 		ENST00000418518 (LINCMD1-001) 52146814-52151119 lincRNA
ENSG00000228689 (RP3-335N17.2)
 ENST00000454361 (RP3-335N17.2-001) 51605265-51622884 antisense
ENST00000587000 (RP3-335N17.2-003) 51621821-51622541 antisense
ENST00000589278 (RP3-335N17.2-002) 51599723-51622541 antisense
ENSG00000240641 (RN7SL580P)
RNA, 7SL, cytoplasmic 580, pseudogene 		ENST00000492489 (RN7SL580P-201) 51975673-51975959 misc_RNA
CIL_0005N4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000043760-ENSMUSG00000025929 CGP 10090 1:20057779-20734496
GeneTranscriptPositionBiotype
ENSMUSG00000025929 (Il17a)
interleukin 17A 		ENSMUST00000027061 (Il17a-001) 20730905-20734496 protein_coding
ENSMUSG00000043760 (Pkhd1)
polycystic kidney and hepatic disease 1 		ENSMUST00000088448 (Pkhd1-001) 20057779-20618064 protein_coding
ENSMUST00000128051 (Pkhd1-004) 20606297-20618040 processed_transcript
ENSMUST00000132647 (Pkhd1-002) 20374722-20409448 processed_transcript
ENSMUST00000147480 (Pkhd1-003) 20592953-20618064 retained_intron
ENSMUSG00000089914 (4930486I03Rik)
RIKEN cDNA 4930486I03 gene 		ENSMUST00000161509 (4930486I03Rik-001) 20356452-20392300 antisense
ENSMUSG00000090142 (Gm15795)
predicted gene 15795 		ENSMUST00000160969 (Gm15795-001) 20444258-20444810 processed_pseudogene
ENSMUSG00000099906 (mmu-mir-133b)
predicted gene 28653 		ENSMUST00000185494 (mmu-mir-133b.1-001) 20679023-20684298 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005N4_0001ENSG00000112115ENST00000340057ENSG00000170927ENST00000340994ENST00000371117ENSG00000225613ENST00000418518ENSG00000228689ENST00000454361ENST00000587000ENST00000589278ENSG00000240641ENST00000492489CIL_0005N4_0002ENSMUSG00000025929ENSMUST00000027061ENSMUSG00000043760ENSMUST00000088448ENSMUST00000128051ENSMUST00000132647ENSMUST00000147480ENSMUSG00000089914ENSMUST00000161509ENSMUSG00000090142ENSMUST00000160969ENSMUSG00000099906ENSMUST00000185494
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005N4_0001ENSG00000112115ENST00000340057ENSG00000170927ENST00000340994ENST00000371117ENSG00000225613ENST00000418518ENSG00000228689ENST00000454361ENST00000587000ENST00000589278ENSG00000240641ENST00000492489CIL_0005N4_0002ENSMUSG00000025929ENSMUST00000027061ENSMUSG00000043760ENSMUST00000088448ENSMUST00000132647ENSMUSG00000089914ENSMUST00000161509ENSMUSG00000090142ENSMUST00000160969ENSMUSG00000099906ENSMUST00000185494
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112115 ENST00000340057 N/A N/A N/A N/A 0.137±0.00 N/A N/A N/A N/A 0.046±0.00 N/A 0.031±0.00 N/A N/A
ENSG00000170927 ENST00000340994 N/A N/A 7.969±0.00 N/A 0.004±0.00 0.018±0.01 N/A 0.606±0.00 0.030±0.00 N/A 0.127±0.00 0.018±0.01 N/A N/A
ENST00000371117 0.005±0.00 N/A 9.442±0.00 0.004±0.00 0.009±0.00 N/A 0.011±0.00 2.593±0.00 0.169±0.00 0.035±0.00 N/A 0.011±0.00 0.023±0.01 0.278±0.05
ENSG00000225613 ENST00000418518 N/A N/A N/A N/A N/A N/A N/A 0.381±0.00 N/A N/A 0.538±0.00 0.156±0.00 N/A 0.082±0.02
ENSG00000228689 ENST00000454361 N/A N/A N/A N/A N/A N/A N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A
ENST00000587000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.405±0.43
ENST00000589278 0.052±0.00 0.097±0.00 N/A 0.208±0.00 0.041±0.00 0.029±0.00 0.104±0.00 N/A 0.045±0.00 0.102±0.00 0.184±0.00 N/A N/A N/A
ENSG00000240641 ENST00000492489 0.056±0.00 0.360±0.00 N/A 0.127±0.00 0.124±0.00 N/A 0.260±0.20 N/A N/A N/A N/A 0.288±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025929 ENSMUST00000027061 N/A N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00
ENSMUSG00000043760 ENSMUST00000088448 0.119±0.16 0.012±0.00 1.255±0.10 0.004±0.00 0.010±0.01 0.188±0.04 N/A 7.043±3.64 0.265±0.20 0.033±0.01 0.004±0.00 0.079±0.02 0.016±0.00 N/A
ENSMUST00000128051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.879±0.00 N/A N/A
ENSMUST00000147480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000089914 ENSMUST00000161509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.371±0.05 N/A 16.241±6.09
ENSMUSG00000090142 ENSMUST00000160969 N/A N/A 0.216±0.01 0.013±0.01 N/A N/A N/A 0.349±0.16 0.140±0.18 N/A N/A 0.147±0.00 0.271±0.17 N/A
ENSMUSG00000099906 ENSMUST00000185494 N/A N/A 0.004±0.00 0.045±0.02 0.445±0.09 N/A N/A 0.039±0.02 0.042±0.08 0.176±0.01 1.086±0.61 0.040±0.00 0.009±0.01 N/A

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