C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005NZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015144-ENSDARG00000089766 CGP 7955 12:30837912-31172799
GeneTranscriptPositionBiotype
ENSDARG00000015144 (SH2D4B (1 of 2))
SH2 domain containing 4B 		ENSDART00000021301 (SH2D4B (1 of 2)-201) 30838175-30853381 protein_coding
ENSDART00000153458 (SH2D4B (1 of 2)-001) 30837912-30853381 protein_coding
ENSDARG00000081844 (BX072570.1)
 ENSDART00000116394 (BX072570.1-201) 30882722-30882811 miRNA
ENSDARG00000089766 (si:dkey-17e6.2)
neuregulin 3 		ENSDART00000126744 (si:dkey-17e6.2-001) 30898859-31172799 protein_coding
ENSDARG00000096697 (si:dkey-17e6.1)
si:dkey-17e6.1 		ENSDART00000152884 (si:dkey-17e6.1-001) 30860813-30921355 antisense

Danio rerio Ensembl (Zv9)

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CIL_0005NZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178217-ENSG00000185737 CGP 9606 10:80537902-82987179
GeneTranscriptPositionBiotype
ENSG00000178217 (SH2D4B)
SH2 domain containing 4B 		ENST00000313455 (SH2D4B-201) 80540819-80646560 protein_coding
ENST00000339284 (SH2D4B-005) 80537902-80646560 protein_coding
ENST00000372150 (SH2D4B-003) 80607299-80646558 processed_transcript
ENST00000481537 (SH2D4B-004) 80642996-80646558 processed_transcript
ENSG00000185737 (NRG3)
neuregulin 3 		ENST00000372141 (NRG3-004) 81875314-82985645 protein_coding
ENST00000372142 (NRG3-001) 81877687-82986967 protein_coding
ENST00000404547 (NRG3-005) 81875341-82985605 protein_coding
ENST00000404576 (NRG3-003) 81877961-82985605 protein_coding
ENST00000537893 (NRG3-201) 82799742-82985605 protein_coding
ENST00000545131 (NRG3-202) 82738576-82987179 protein_coding
ENST00000555784 (NRG3-006) 81877961-82985605 nonsense_mediated_decay
ENST00000556918 (NRG3-002) 81877961-82985605 protein_coding
ENST00000602794 (NRG3-007) 81877897-82987179 nonsense_mediated_decay
ENSG00000225738 (NRG3-AS1)
NRG3 antisense RNA 1 		ENST00000448936 (NRG3-AS1-001) 82230130-82232919 antisense
ENST00000502725 (NRG3-AS1-002) 82228985-82232577 antisense
ENST00000505481 (NRG3-AS1-003) 82232250-82232920 retained_intron
ENSG00000226466 (RPA2P2)
replication protein A2 pseudogene 2 		ENST00000419698 (RPA2P2-001) 81136540-81137335 processed_pseudogene
ENSG00000229458 (RP11-202D18.2)
 ENST00000440589 (RP11-202D18.2-001) 82224213-82229179 antisense
ENSG00000231082 (RP11-514F8.2)
 ENST00000436500 (RP11-514F8.2-001) 80649797-80653732 lincRNA
ENSG00000274635 (AL354749.1)
 ENST00000610461 (AL354749.1-201) 82864174-82864259 miRNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005NZ_0001ENSDARG00000015144ENSDART00000021301ENSDART00000153458ENSDARG00000081844ENSDART00000116394ENSDARG00000089766ENSDART00000126744ENSDARG00000096697ENSDART00000152884CIL_0005NZ_0002ENSG00000178217ENST00000313455ENST00000339284ENST00000372150ENST00000481537ENSG00000185737ENST00000372141ENST00000372142ENST00000404547ENST00000404576ENST00000537893ENST00000545131ENST00000555784ENST00000556918ENST00000602794ENSG00000225738ENST00000448936ENST00000502725ENST00000505481ENSG00000226466ENST00000419698ENSG00000229458ENST00000440589ENSG00000231082ENST00000436500ENSG00000274635ENST00000610461
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005NZ_0001ENSDARG00000015144ENSDART00000021301ENSDART00000153458ENSDARG00000081844ENSDART00000116394ENSDARG00000089766ENSDART00000126744ENSDARG00000096697ENSDART00000152884CIL_0005NZ_0002ENSG00000178217ENST00000313455ENST00000339284ENST00000372150ENST00000481537ENSG00000185737ENST00000372141ENST00000404547ENST00000404576ENST00000537893ENST00000545131ENST00000602794ENSG00000225738ENST00000448936ENST00000502725ENSG00000226466ENST00000419698ENSG00000229458ENST00000440589ENSG00000231082ENST00000436500ENSG00000274635ENST00000610461
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015144 ENSDART00000021301 N/A N/A N/A 0.039±0.00 N/A N/A 2.251±2.21 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000153458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.783±0.00 N/A N/A N/A
ENSDARG00000081844 ENSDART00000116394 N/A N/A N/A 125.346±0.00 N/A N/A 10.148±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000089766 ENSDART00000126744 N/A N/A N/A 13.252±3.59 N/A N/A 0.269±0.16 0.063±0.00 0.013±0.00 N/A 0.659±0.00 N/A N/A N/A
ENSDARG00000096697 ENSDART00000152884 N/A N/A N/A 0.207±0.07 N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000178217 ENST00000313455 0.046±0.00 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A 0.130±0.00 N/A 0.034±0.02 0.030±0.01 0.140±0.06
ENST00000339284 0.032±0.00 N/A N/A N/A N/A 0.044±0.03 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A
ENST00000481537 N/A 0.038±0.00 N/A N/A 0.004±0.00 N/A 0.004±0.00 0.024±0.00 0.119±0.00 0.515±0.00 N/A N/A 0.018±0.00 N/A
ENSG00000185737 ENST00000372141 0.008±0.00 N/A N/A 3.108±1.19 0.018±0.00 0.061±0.00 0.040±0.00 N/A 0.105±0.00 0.572±0.00 N/A 0.087±0.07 0.031±0.00 N/A
ENST00000372142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000404547 N/A N/A N/A 1.846±0.00 N/A N/A N/A N/A N/A 0.171±0.00 N/A N/A 0.147±0.00 0.175±0.00
ENST00000404576 N/A N/A 0.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 0.251±0.00
ENST00000545131 0.013±0.00 N/A N/A 4.690±1.20 0.020±0.00 N/A 0.030±0.00 0.174±0.04 0.063±0.00 N/A N/A 0.060±0.00 0.052±0.03 N/A
ENST00000555784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602794 N/A N/A 0.054±0.00 N/A N/A N/A N/A 0.085±0.00 N/A 0.076±0.00 N/A N/A N/A 0.063±0.00
ENSG00000225738 ENST00000448936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.289±0.00
ENST00000502725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.840±0.00
ENST00000505481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226466 ENST00000419698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A
ENSG00000229458 ENST00000440589 N/A N/A N/A N/A N/A N/A N/A 0.551±0.00 N/A N/A N/A N/A N/A 0.367±0.00
ENSG00000231082 ENST00000436500 N/A 0.185±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.506±0.00
ENSG00000274635 ENST00000610461 N/A 0.235±0.00 N/A 0.459±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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