C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005UM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076250-ENSDARG00000059885 CGP 7955 8:51831869-51962748
GeneTranscriptPositionBiotype
ENSDARG00000059885 (frmd3)
FERM domain containing 3 		ENSDART00000083760 (frmd3-201) 51883819-51962634 protein_coding
ENSDART00000139494 (frmd3-002) 51878790-51884172 protein_coding
ENSDART00000142115 (frmd3-001) 51899439-51962748 protein_coding
ENSDARG00000076250 (rasef)
RAS and EF-hand domain containing 		ENSDART00000108613 (rasef-001) 51831869-51866965 protein_coding
CIL_0005UM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165105-ENSG00000172159 CGP 9606 9:82979585-83538546
GeneTranscriptPositionBiotype
ENSG00000165105 (RASEF)
RAS and EF-hand domain containing 		ENST00000340717 (RASEF-002) 83054660-83063177 protein_coding
ENST00000376447 (RASEF-001) 82979585-83063128 protein_coding
ENSG00000172159 (FRMD3)
FERM domain containing 3 		ENST00000304195 (FRMD3-006) 83244622-83538438 protein_coding
ENST00000328788 (FRMD3-003) 83242990-83267287 protein_coding
ENST00000376434 (FRMD3-002) 83242990-83331961 protein_coding
ENST00000376438 (FRMD3-001) 83242990-83538546 protein_coding
ENST00000431299 (FRMD3-005) 83297532-83311966 protein_coding
ENST00000465485 (FRMD3-004) 83247972-83281608 processed_transcript
ENST00000621208 (FRMD3-201) 83244626-83467742 protein_coding
ENSG00000229109 (RP11-439K3.1)
 ENST00000416473 (RP11-439K3.1-001) 83219331-83234242 antisense
ENSG00000237529 (RP11-439K3.3)
 ENST00000458111 (RP11-439K3.3-001) 83276376-83279499 antisense
ENSG00000251752 (RNU4-29P)
RNA, U4 small nuclear 29, pseudogene 		ENST00000515943 (RNU4-29P-201) 83275941-83276114 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005UM_0001ENSDARG00000059885ENSDART00000083760ENSDART00000139494ENSDART00000142115ENSDARG00000076250ENSDART00000108613CIL_0005UM_0002ENSG00000165105ENST00000340717ENST00000376447ENSG00000172159ENST00000304195ENST00000328788ENST00000376434ENST00000376438ENST00000431299ENST00000465485ENST00000621208ENSG00000229109ENST00000416473ENSG00000237529ENST00000458111ENSG00000251752ENST00000515943
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005UM_0001ENSDARG00000059885ENSDART00000083760ENSDART00000142115ENSDARG00000076250ENSDART00000108613CIL_0005UM_0002ENSG00000165105ENST00000340717ENST00000376447ENSG00000172159ENST00000304195ENST00000328788ENST00000376434ENST00000376438ENST00000621208ENSG00000229109ENST00000416473ENSG00000237529ENST00000458111ENSG00000251752ENST00000515943
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000059885 ENSDART00000083760 N/A N/A N/A 0.765±0.00 N/A N/A 0.070±0.00 0.421±0.00 N/A N/A 0.028±0.00 N/A N/A N/A
ENSDART00000139494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142115 N/A N/A N/A N/A N/A N/A 0.067±0.00 0.128±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000076250 ENSDART00000108613 N/A N/A N/A 0.146±0.06 N/A N/A 0.223±0.27 0.292±0.00 0.045±0.00 N/A 0.048±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165105 ENST00000340717 1.249±0.00 2.615±0.00 N/A 1.398±0.05 3.675±2.56 6.861±0.00 2.666±0.81 0.753±0.00 5.451±0.00 2.166±0.96 0.953±0.84 N/A 1.423±1.06 6.952±0.00
ENST00000376447 0.055±0.00 0.281±0.00 0.193±0.00 0.124±0.01 1.833±1.22 1.796±0.96 N/A 1.151±1.12 0.387±0.08 0.774±0.02 N/A 7.457±7.46 0.625±0.19 0.999±0.06
ENSG00000172159 ENST00000304195 5.007±0.00 1.514±0.00 1.230±0.00 1.195±0.24 1.429±0.11 1.165±0.35 3.998±1.34 5.685±0.00 0.866±0.86 0.344±0.00 1.269±0.00 0.247±0.17 3.056±0.72 N/A
ENST00000328788 N/A N/A N/A N/A N/A N/A 21.290±0.00 N/A N/A N/A 2.100±0.00 N/A N/A N/A
ENST00000376434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.093±0.00
ENST00000376438 N/A N/A N/A N/A N/A 1.181±0.00 N/A N/A N/A 1.096±0.00 1.114±0.00 N/A N/A 1.430±0.00
ENST00000431299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621208 N/A N/A N/A N/A N/A N/A 0.700±0.00 0.109±0.00 N/A N/A 0.245±0.00 0.427±0.35 N/A 0.315±0.00
ENSG00000229109 ENST00000416473 N/A 0.035±0.00 0.956±0.00 0.110±0.00 N/A N/A 0.094±0.00 N/A N/A N/A N/A 0.093±0.00 0.117±0.02 0.145±0.05
ENSG00000237529 ENST00000458111 N/A 0.150±0.00 0.153±0.00 0.373±0.00 0.222±0.00 N/A 0.052±0.00 N/A N/A N/A N/A 0.133±0.00 N/A 0.302±0.00
ENSG00000251752 ENST00000515943 N/A 0.079±0.00 N/A N/A N/A N/A N/A 0.847±0.00 N/A N/A N/A N/A N/A N/A

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