C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006CB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185112-ENSG00000173950 CGP 9606 3:194686544-195271167
GeneTranscriptPositionBiotype
ENSG00000173950 (XXYLT1)
xyloside xylosyltransferase 1 		ENST00000310380 (XXYLT1-001) 195068279-195271167 protein_coding
ENST00000356740 (XXYLT1-013) 195069715-195122192 protein_coding
ENST00000418940 (XXYLT1-007) 195069970-195247856 nonsense_mediated_decay
ENST00000429994 (XXYLT1-003) 195069677-195247920 protein_coding
ENST00000437101 (XXYLT1-004) 195068601-195184798 protein_coding
ENST00000455281 (XXYLT1-005) 195226724-195270861 nonsense_mediated_decay
ENST00000460582 (XXYLT1-012) 195069593-195087372 processed_transcript
ENST00000473200 (XXYLT1-010) 195069631-195154103 processed_transcript
ENST00000476897 (XXYLT1-008) 195175655-195209614 processed_transcript
ENST00000491138 (XXYLT1-009) 195070037-195209866 processed_transcript
ENST00000494175 (XXYLT1-006) 195180394-195260080 processed_transcript
ENST00000496644 (XXYLT1-011) 195070038-195094209 processed_transcript
ENSG00000185112 (FAM43A)
family with sequence similarity 43, member A 		ENST00000329759 (FAM43A-001) 194686544-194689037 protein_coding
ENSG00000230266 (XXYLT1-AS2)
XXYLT1 antisense RNA 2 		ENST00000426468 (XXYLT1-AS2-002) 195147891-195152463 antisense
ENST00000447975 (XXYLT1-AS2-001) 195147871-195152790 antisense
ENSG00000230401 (AC090505.4)
 ENST00000422271 (AC090505.4-001) 194765238-194768712 lincRNA
ENSG00000233987 (AC106706.1)
 ENST00000439479 (AC106706.1-001) 194705548-194706964 lincRNA
ENSG00000234805 (AC090505.5)
 ENST00000430515 (AC090505.5-001) 194755589-194757422 processed_pseudogene
ENSG00000238031 (AC090505.1)
 ENST00000427064 (AC090505.1-001) 194827890-194832592 lincRNA
ENSG00000244314 (RN7SL36P)
RNA, 7SL, cytoplasmic 36, pseudogene 		ENST00000469345 (RN7SL36P-201) 195146728-195147003 misc_RNA
CIL_0006CB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046546-ENSMUSG00000047434 CGP 10090 16:30599723-31081432
GeneTranscriptPositionBiotype
ENSMUSG00000046546 (Fam43a)
family with sequence similarity 43, member A 		ENSMUST00000059078 (Fam43a-001) 30599723-30602797 protein_coding
ENSMUSG00000047434 (Xxylt1)
xyloside xylosyltransferase 1 		ENSMUST00000055389 (Xxylt1-001) 30955627-31081432 protein_coding
ENSMUST00000140566 (Xxylt1-004) 30957461-31061427 processed_transcript
ENSMUST00000142870 (Xxylt1-003) 31007792-31067853 processed_transcript
ENSMUST00000153859 (Xxylt1-002) 31007750-31069826 processed_transcript
ENSMUSG00000087605 (Gm15742)
predicted gene 15742 		ENSMUST00000123905 (Gm15742-001) 30969393-30973518 sense_intronic
ENSMUSG00000095791 (Gm26295)
predicted gene, 26295 		ENSMUST00000179690 (Gm26295-201) 30814162-30814268 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CB_0001ENSG00000173950ENST00000310380ENST00000356740ENST00000418940ENST00000429994ENST00000437101ENST00000455281ENST00000460582ENST00000473200ENST00000476897ENST00000491138ENST00000494175ENST00000496644ENSG00000185112ENST00000329759ENSG00000230266ENST00000426468ENST00000447975ENSG00000230401ENST00000422271ENSG00000233987ENST00000439479ENSG00000234805ENST00000430515ENSG00000238031ENST00000427064ENSG00000244314ENST00000469345CIL_0006CB_0002ENSMUSG00000046546ENSMUST00000059078ENSMUSG00000047434ENSMUST00000055389ENSMUST00000140566ENSMUST00000142870ENSMUST00000153859ENSMUSG00000087605ENSMUST00000123905ENSMUSG00000095791ENSMUST00000179690
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CB_0001ENSG00000173950ENST00000310380ENST00000429994ENST00000437101ENST00000491138ENSG00000185112ENST00000329759ENSG00000230266ENST00000426468ENST00000447975ENSG00000230401ENST00000422271ENSG00000233987ENST00000439479ENSG00000234805ENST00000430515ENSG00000238031ENST00000427064ENSG00000244314ENST00000469345CIL_0006CB_0002ENSMUSG00000046546ENSMUST00000059078ENSMUSG00000047434ENSMUST00000055389ENSMUST00000140566ENSMUSG00000087605ENSMUST00000123905ENSMUSG00000095791ENSMUST00000179690
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000173950 ENST00000310380 4.342±0.00 6.377±0.00 0.457±0.00 1.571±1.33 2.872±0.00 0.673±0.21 1.146±0.00 2.022±1.82 0.569±0.33 1.318±1.14 0.562±0.23 2.619±2.76 9.301±2.45 0.683±0.23
ENST00000356740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429994 N/A N/A N/A N/A N/A 0.422±0.00 N/A 0.624±0.00 1.397±0.00 N/A 0.233±0.00 N/A N/A N/A
ENST00000437101 N/A N/A N/A N/A 0.838±0.00 N/A N/A N/A N/A N/A N/A 0.434±0.00 N/A N/A
ENST00000455281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491138 N/A N/A N/A N/A N/A 0.492±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185112 ENST00000329759 14.331±0.00 22.802±0.00 0.761±0.00 1.733±0.38 4.629±3.89 3.042±2.43 2.852±1.97 4.158±3.37 1.316±0.00 2.629±1.06 1.581±0.76 3.583±2.85 19.535±4.44 4.090±2.47
ENSG00000230266 ENST00000426468 N/A 1.086±0.00 0.626±0.00 N/A N/A 0.141±0.00 N/A 0.356±0.00 0.089±0.00 0.712±0.00 N/A 0.698±0.00 0.427±0.32 0.094±0.00
ENST00000447975 0.056±0.00 1.110±0.00 N/A 0.122±0.00 N/A N/A 0.018±0.00 N/A N/A 0.248±0.00 0.246±0.00 0.082±0.02 0.256±0.13 0.034±0.00
ENSG00000230401 ENST00000422271 0.922±0.00 1.668±0.00 N/A 0.716±0.00 0.491±0.00 0.806±0.00 0.323±0.00 0.526±0.00 0.485±0.00 0.819±0.00 0.211±0.00 0.233±0.15 N/A 0.697±0.46
ENSG00000233987 ENST00000439479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.311±0.00 N/A N/A 0.179±0.11
ENSG00000234805 ENST00000430515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.143±0.04 0.067±0.00
ENSG00000238031 ENST00000427064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00
ENSG00000244314 ENST00000469345 N/A 0.271±0.00 N/A N/A 0.071±0.00 N/A N/A N/A N/A N/A N/A 0.702±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000046546 ENSMUST00000059078 15.825±4.28 24.891±2.39 4.690±0.61 3.176±1.29 35.011±17.05 9.329±0.79 6.709±3.50 14.096±1.64 2.801±0.87 21.828±7.73 2.770±0.69 18.391±8.06 5.536±3.07 0.226±0.13
ENSMUSG00000047434 ENSMUST00000055389 7.918±2.03 14.578±1.07 3.964±0.94 3.668±0.24 8.722±2.58 6.972±0.89 4.120±0.20 5.718±0.79 1.053±0.18 8.531±0.95 0.560±0.09 14.509±1.03 1.888±0.61 0.700±0.09
ENSMUST00000140566 6.425±0.62 N/A N/A N/A 5.930±0.77 N/A N/A 4.321±0.00 3.351±0.00 6.124±0.00 N/A 10.949±0.17 N/A 0.949±0.00
ENSMUST00000142870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087605 ENSMUST00000123905 0.157±0.10 0.124±0.03 0.060±0.00 0.071±0.00 0.192±0.04 0.256±0.07 0.118±0.08 0.192±0.14 0.125±0.09 0.176±0.09 0.098±0.02 0.333±0.27 0.061±0.02 N/A
ENSMUSG00000095791 ENSMUST00000179690 N/A N/A 6.072±0.00 4.871±0.00 N/A N/A N/A N/A 2.069±0.00 N/A N/A N/A N/A N/A

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