Notice (8): Undefined index: CIL_0007H9_0001 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007H9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000123485' => 'Holliday junction recognition protein',
'ENSG00000185038' => 'maestro heat-like repeat family member 2A',
'ENSMUSG00000044783' => 'Holliday junction recognition protein',
'ENSMUSG00000079429' => 'maestro heat-like repeat family member 2A'
),
'gene_name_arr' => array(
'ENSG00000123485' => 'HJURP',
'ENSG00000185038' => 'MROH2A',
'ENSMUSG00000044783' => 'Hjurp',
'ENSMUSG00000079429' => 'Mroh2a'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 10 => 'Brain',
(int) 18 => 'Breast',
(int) 23 => 'Colon',
(int) 27 => 'Heart',
(int) 30 => 'Kidney',
(int) 35 => 'Liver',
(int) 42 => 'Lung',
(int) 47 => 'Muscle',
(int) 53 => 'Ovary',
(int) 60 => 'Placenta',
(int) 67 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 29,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000373395' => array(
'start' => '233844225',
'end' => '233846135',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'HJURP-003'
),
'ENST00000411486' => array(
'start' => '233836703',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-001'
),
'ENST00000414924' => array(
'start' => '233840815',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-007'
),
'ENST00000432087' => array(
'start' => '233836701',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-201'
),
'ENST00000433484' => array(
'start' => '233833416',
'end' => '233840738',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'HJURP-005'
),
'ENST00000434039' => array(
'start' => '233841893',
'end' => '233845799',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'HJURP-008'
),
'ENST00000441687' => array(
'start' => '233836701',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-202'
),
'ENST00000453122' => array(
'start' => '233842116',
'end' => '233854535',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'HJURP-006'
),
'ENST00000454020' => array(
'start' => '233841851',
'end' => '233854474',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-002'
),
'ENST00000389758' => array(
'start' => '233778330',
'end' => '233833423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-001'
),
'ENST00000428446' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-007'
),
'ENST00000430892' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-006'
),
'ENST00000454283' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-008'
),
'ENST00000477506' => array(
'start' => '233796288',
'end' => '233802468',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MROH2A-003'
),
'ENST00000480634' => array(
'start' => '233779671',
'end' => '233793817',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MROH2A-002'
),
'ENST00000487979' => array(
'start' => '233828555',
'end' => '233833418',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MROH2A-005'
),
'ENST00000610772' => array(
'start' => '233775679',
'end' => '233833423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-201'
),
'ENSMUST00000054674' => array(
'start' => '88262471',
'end' => '88277633',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-001'
),
'ENSMUST00000065420' => array(
'start' => '88264828',
'end' => '88277557',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-002'
),
'ENSMUST00000126739' => array(
'start' => '88274712',
'end' => '88277579',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-005'
),
'ENSMUST00000127446' => array(
'start' => '88266349',
'end' => '88269392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-004'
),
'ENSMUST00000128532' => array(
'start' => '88269337',
'end' => '88273119',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-007'
),
'ENSMUST00000147393' => array(
'start' => '88264978',
'end' => '88277506',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-003'
),
'ENSMUST00000148384' => array(
'start' => '88269378',
'end' => '88270947',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-006'
),
'ENSMUST00000061013' => array(
'start' => '88227020',
'end' => '88262289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-201'
),
'ENSMUST00000113130' => array(
'start' => '88227031',
'end' => '88262289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-001'
),
'ENSMUST00000135948' => array(
'start' => '88257758',
'end' => '88260169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-003'
),
'ENSMUST00000142632' => array(
'start' => '88238108',
'end' => '88240937',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mroh2a-004'
),
'ENSMUST00000148474' => array(
'start' => '88226986',
'end' => '88233461',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mroh2a-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007H9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007H9_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000044783' => array(
[maximum depth reached]
),
'ENSMUSG00000079429' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Brain',
(int) 23 => 'Ovary',
(int) 24 => 'Adipose',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Adrenal',
(int) 36 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000123485' => 'Holliday junction recognition protein',
'ENSG00000185038' => 'maestro heat-like repeat family member 2A',
'ENSMUSG00000044783' => 'Holliday junction recognition protein',
'ENSMUSG00000079429' => 'maestro heat-like repeat family member 2A'
)
$gene_name_arr = array(
'ENSG00000123485' => 'HJURP',
'ENSG00000185038' => 'MROH2A',
'ENSMUSG00000044783' => 'Hjurp',
'ENSMUSG00000079429' => 'Mroh2a'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007H9_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '233775679',
'seq_end' => '233854566',
'region_length' => '78887',
'region_type' => 'CGP',
'el_id' => 'ENSG00000185038-ENSG00000123485'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007H9_0002',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '88226986',
'seq_end' => '88277633',
'region_length' => '50647',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079429-ENSMUSG00000044783'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 10 => 'Brain',
(int) 18 => 'Breast',
(int) 23 => 'Colon',
(int) 27 => 'Heart',
(int) 30 => 'Kidney',
(int) 35 => 'Liver',
(int) 42 => 'Lung',
(int) 47 => 'Muscle',
(int) 53 => 'Ovary',
(int) 60 => 'Placenta',
(int) 67 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 29
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000373395' => array(
'start' => '233844225',
'end' => '233846135',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'HJURP-003'
),
'ENST00000411486' => array(
'start' => '233836703',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-001'
),
'ENST00000414924' => array(
'start' => '233840815',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-007'
),
'ENST00000432087' => array(
'start' => '233836701',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-201'
),
'ENST00000433484' => array(
'start' => '233833416',
'end' => '233840738',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'HJURP-005'
),
'ENST00000434039' => array(
'start' => '233841893',
'end' => '233845799',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'HJURP-008'
),
'ENST00000441687' => array(
'start' => '233836701',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-202'
),
'ENST00000453122' => array(
'start' => '233842116',
'end' => '233854535',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'HJURP-006'
),
'ENST00000454020' => array(
'start' => '233841851',
'end' => '233854474',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-002'
),
'ENST00000389758' => array(
'start' => '233778330',
'end' => '233833423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-001'
),
'ENST00000428446' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-007'
),
'ENST00000430892' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-006'
),
'ENST00000454283' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-008'
),
'ENST00000477506' => array(
'start' => '233796288',
'end' => '233802468',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MROH2A-003'
),
'ENST00000480634' => array(
'start' => '233779671',
'end' => '233793817',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MROH2A-002'
),
'ENST00000487979' => array(
'start' => '233828555',
'end' => '233833418',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MROH2A-005'
),
'ENST00000610772' => array(
'start' => '233775679',
'end' => '233833423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-201'
),
'ENSMUST00000054674' => array(
'start' => '88262471',
'end' => '88277633',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-001'
),
'ENSMUST00000065420' => array(
'start' => '88264828',
'end' => '88277557',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-002'
),
'ENSMUST00000126739' => array(
'start' => '88274712',
'end' => '88277579',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-005'
),
'ENSMUST00000127446' => array(
'start' => '88266349',
'end' => '88269392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-004'
),
'ENSMUST00000128532' => array(
'start' => '88269337',
'end' => '88273119',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-007'
),
'ENSMUST00000147393' => array(
'start' => '88264978',
'end' => '88277506',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-003'
),
'ENSMUST00000148384' => array(
'start' => '88269378',
'end' => '88270947',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-006'
),
'ENSMUST00000061013' => array(
'start' => '88227020',
'end' => '88262289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-201'
),
'ENSMUST00000113130' => array(
'start' => '88227031',
'end' => '88262289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-001'
),
'ENSMUST00000135948' => array(
'start' => '88257758',
'end' => '88260169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-003'
),
'ENSMUST00000142632' => array(
'start' => '88238108',
'end' => '88240937',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mroh2a-004'
),
'ENSMUST00000148474' => array(
'start' => '88226986',
'end' => '88233461',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mroh2a-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007H9_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000044783' => array(
[maximum depth reached]
),
'ENSMUSG00000079429' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Brain',
(int) 23 => 'Ovary',
(int) 24 => 'Adipose',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Adrenal',
(int) 36 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007H9_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '233775679',
'seq_end' => '233854566',
'region_length' => '78887',
'region_type' => 'CGP',
'el_id' => 'ENSG00000185038-ENSG00000123485'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007H9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000123485' => 'Holliday junction recognition protein',
'ENSG00000185038' => 'maestro heat-like repeat family member 2A',
'ENSMUSG00000044783' => 'Holliday junction recognition protein',
'ENSMUSG00000079429' => 'maestro heat-like repeat family member 2A'
),
'gene_name_arr' => array(
'ENSG00000123485' => 'HJURP',
'ENSG00000185038' => 'MROH2A',
'ENSMUSG00000044783' => 'Hjurp',
'ENSMUSG00000079429' => 'Mroh2a'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 10 => 'Brain',
(int) 18 => 'Breast',
(int) 23 => 'Colon',
(int) 27 => 'Heart',
(int) 30 => 'Kidney',
(int) 35 => 'Liver',
(int) 42 => 'Lung',
(int) 47 => 'Muscle',
(int) 53 => 'Ovary',
(int) 60 => 'Placenta',
(int) 67 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 29,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000373395' => array(
'start' => '233844225',
'end' => '233846135',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'HJURP-003'
),
'ENST00000411486' => array(
'start' => '233836703',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-001'
),
'ENST00000414924' => array(
'start' => '233840815',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-007'
),
'ENST00000432087' => array(
'start' => '233836701',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-201'
),
'ENST00000433484' => array(
'start' => '233833416',
'end' => '233840738',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'HJURP-005'
),
'ENST00000434039' => array(
'start' => '233841893',
'end' => '233845799',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'HJURP-008'
),
'ENST00000441687' => array(
'start' => '233836701',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-202'
),
'ENST00000453122' => array(
'start' => '233842116',
'end' => '233854535',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'HJURP-006'
),
'ENST00000454020' => array(
'start' => '233841851',
'end' => '233854474',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-002'
),
'ENST00000389758' => array(
'start' => '233778330',
'end' => '233833423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-001'
),
'ENST00000428446' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-007'
),
'ENST00000430892' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-006'
),
'ENST00000454283' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-008'
),
'ENST00000477506' => array(
'start' => '233796288',
'end' => '233802468',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MROH2A-003'
),
'ENST00000480634' => array(
'start' => '233779671',
'end' => '233793817',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MROH2A-002'
),
'ENST00000487979' => array(
'start' => '233828555',
'end' => '233833418',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MROH2A-005'
),
'ENST00000610772' => array(
'start' => '233775679',
'end' => '233833423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-201'
),
'ENSMUST00000054674' => array(
'start' => '88262471',
'end' => '88277633',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-001'
),
'ENSMUST00000065420' => array(
'start' => '88264828',
'end' => '88277557',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-002'
),
'ENSMUST00000126739' => array(
'start' => '88274712',
'end' => '88277579',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-005'
),
'ENSMUST00000127446' => array(
'start' => '88266349',
'end' => '88269392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-004'
),
'ENSMUST00000128532' => array(
'start' => '88269337',
'end' => '88273119',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-007'
),
'ENSMUST00000147393' => array(
'start' => '88264978',
'end' => '88277506',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-003'
),
'ENSMUST00000148384' => array(
'start' => '88269378',
'end' => '88270947',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-006'
),
'ENSMUST00000061013' => array(
'start' => '88227020',
'end' => '88262289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-201'
),
'ENSMUST00000113130' => array(
'start' => '88227031',
'end' => '88262289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-001'
),
'ENSMUST00000135948' => array(
'start' => '88257758',
'end' => '88260169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-003'
),
'ENSMUST00000142632' => array(
'start' => '88238108',
'end' => '88240937',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mroh2a-004'
),
'ENSMUST00000148474' => array(
'start' => '88226986',
'end' => '88233461',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mroh2a-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007H9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007H9_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000044783' => array(
[maximum depth reached]
),
'ENSMUSG00000079429' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Brain',
(int) 23 => 'Ovary',
(int) 24 => 'Adipose',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Adrenal',
(int) 36 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000123485' => 'Holliday junction recognition protein',
'ENSG00000185038' => 'maestro heat-like repeat family member 2A',
'ENSMUSG00000044783' => 'Holliday junction recognition protein',
'ENSMUSG00000079429' => 'maestro heat-like repeat family member 2A'
)
$gene_name_arr = array(
'ENSG00000123485' => 'HJURP',
'ENSG00000185038' => 'MROH2A',
'ENSMUSG00000044783' => 'Hjurp',
'ENSMUSG00000079429' => 'Mroh2a'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007H9_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '233775679',
'seq_end' => '233854566',
'region_length' => '78887',
'region_type' => 'CGP',
'el_id' => 'ENSG00000185038-ENSG00000123485'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007H9_0002',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '88226986',
'seq_end' => '88277633',
'region_length' => '50647',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000079429-ENSMUSG00000044783'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 6 => 'Bladder',
(int) 10 => 'Brain',
(int) 18 => 'Breast',
(int) 23 => 'Colon',
(int) 27 => 'Heart',
(int) 30 => 'Kidney',
(int) 35 => 'Liver',
(int) 42 => 'Lung',
(int) 47 => 'Muscle',
(int) 53 => 'Ovary',
(int) 60 => 'Placenta',
(int) 67 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 29
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000373395' => array(
'start' => '233844225',
'end' => '233846135',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'HJURP-003'
),
'ENST00000411486' => array(
'start' => '233836703',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-001'
),
'ENST00000414924' => array(
'start' => '233840815',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-007'
),
'ENST00000432087' => array(
'start' => '233836701',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-201'
),
'ENST00000433484' => array(
'start' => '233833416',
'end' => '233840738',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'HJURP-005'
),
'ENST00000434039' => array(
'start' => '233841893',
'end' => '233845799',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'HJURP-008'
),
'ENST00000441687' => array(
'start' => '233836701',
'end' => '233854566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-202'
),
'ENST00000453122' => array(
'start' => '233842116',
'end' => '233854535',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'HJURP-006'
),
'ENST00000454020' => array(
'start' => '233841851',
'end' => '233854474',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'HJURP-002'
),
'ENST00000389758' => array(
'start' => '233778330',
'end' => '233833423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-001'
),
'ENST00000428446' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-007'
),
'ENST00000430892' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-006'
),
'ENST00000454283' => array(
'start' => '233775724',
'end' => '233779782',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-008'
),
'ENST00000477506' => array(
'start' => '233796288',
'end' => '233802468',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MROH2A-003'
),
'ENST00000480634' => array(
'start' => '233779671',
'end' => '233793817',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MROH2A-002'
),
'ENST00000487979' => array(
'start' => '233828555',
'end' => '233833418',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MROH2A-005'
),
'ENST00000610772' => array(
'start' => '233775679',
'end' => '233833423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MROH2A-201'
),
'ENSMUST00000054674' => array(
'start' => '88262471',
'end' => '88277633',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-001'
),
'ENSMUST00000065420' => array(
'start' => '88264828',
'end' => '88277557',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-002'
),
'ENSMUST00000126739' => array(
'start' => '88274712',
'end' => '88277579',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-005'
),
'ENSMUST00000127446' => array(
'start' => '88266349',
'end' => '88269392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-004'
),
'ENSMUST00000128532' => array(
'start' => '88269337',
'end' => '88273119',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-007'
),
'ENSMUST00000147393' => array(
'start' => '88264978',
'end' => '88277506',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Hjurp-003'
),
'ENSMUST00000148384' => array(
'start' => '88269378',
'end' => '88270947',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Hjurp-006'
),
'ENSMUST00000061013' => array(
'start' => '88227020',
'end' => '88262289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-201'
),
'ENSMUST00000113130' => array(
'start' => '88227031',
'end' => '88262289',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-001'
),
'ENSMUST00000135948' => array(
'start' => '88257758',
'end' => '88260169',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mroh2a-003'
),
'ENSMUST00000142632' => array(
'start' => '88238108',
'end' => '88240937',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mroh2a-004'
),
'ENSMUST00000148474' => array(
'start' => '88226986',
'end' => '88233461',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mroh2a-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007H9_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000044783' => array(
[maximum depth reached]
),
'ENSMUSG00000079429' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Brain',
(int) 23 => 'Ovary',
(int) 24 => 'Adipose',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Adrenal',
(int) 36 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007H9_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '233775679',
'seq_end' => '233854566',
'region_length' => '78887',
'region_type' => 'CGP',
'el_id' => 'ENSG00000185038-ENSG00000123485'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| ENSG00000185038-ENSG00000123485 |
CGP |
9606 |
2:233775679-233854566  |
| Gene | Transcript | Position | Biotype |
|---|
(Hjurp)