Institute of Cardiovascular Regeneration Webtool Repository

Notice (8): Undefined index: CIL_0007H9_0001 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007H9_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000123485' => 'Holliday junction recognition protein',
		'ENSG00000185038' => 'maestro heat-like repeat family member 2A',
		'ENSMUSG00000044783' => 'Holliday junction recognition protein',
		'ENSMUSG00000079429' => 'maestro heat-like repeat family member 2A'
	),
	'gene_name_arr' => array(
		'ENSG00000123485' => 'HJURP',
		'ENSG00000185038' => 'MROH2A',
		'ENSMUSG00000044783' => 'Hjurp',
		'ENSMUSG00000079429' => 'Mroh2a'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 3 => 'Adrenal',
		(int) 6 => 'Bladder',
		(int) 10 => 'Brain',
		(int) 18 => 'Breast',
		(int) 23 => 'Colon',
		(int) 27 => 'Heart',
		(int) 30 => 'Kidney',
		(int) 35 => 'Liver',
		(int) 42 => 'Lung',
		(int) 47 => 'Muscle',
		(int) 53 => 'Ovary',
		(int) 60 => 'Placenta',
		(int) 67 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 29,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000373395' => array(
			'start' => '233844225',
			'end' => '233846135',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'HJURP-003'
		),
		'ENST00000411486' => array(
			'start' => '233836703',
			'end' => '233854566',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'HJURP-001'
		),
		'ENST00000414924' => array(
			'start' => '233840815',
			'end' => '233854566',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'HJURP-007'
		),
		'ENST00000432087' => array(
			'start' => '233836701',
			'end' => '233854566',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'HJURP-201'
		),
		'ENST00000433484' => array(
			'start' => '233833416',
			'end' => '233840738',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'HJURP-005'
		),
		'ENST00000434039' => array(
			'start' => '233841893',
			'end' => '233845799',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'HJURP-008'
		),
		'ENST00000441687' => array(
			'start' => '233836701',
			'end' => '233854566',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'HJURP-202'
		),
		'ENST00000453122' => array(
			'start' => '233842116',
			'end' => '233854535',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'HJURP-006'
		),
		'ENST00000454020' => array(
			'start' => '233841851',
			'end' => '233854474',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'HJURP-002'
		),
		'ENST00000389758' => array(
			'start' => '233778330',
			'end' => '233833423',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MROH2A-001'
		),
		'ENST00000428446' => array(
			'start' => '233775724',
			'end' => '233779782',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MROH2A-007'
		),
		'ENST00000430892' => array(
			'start' => '233775724',
			'end' => '233779782',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MROH2A-006'
		),
		'ENST00000454283' => array(
			'start' => '233775724',
			'end' => '233779782',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MROH2A-008'
		),
		'ENST00000477506' => array(
			'start' => '233796288',
			'end' => '233802468',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MROH2A-003'
		),
		'ENST00000480634' => array(
			'start' => '233779671',
			'end' => '233793817',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MROH2A-002'
		),
		'ENST00000487979' => array(
			'start' => '233828555',
			'end' => '233833418',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MROH2A-005'
		),
		'ENST00000610772' => array(
			'start' => '233775679',
			'end' => '233833423',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MROH2A-201'
		),
		'ENSMUST00000054674' => array(
			'start' => '88262471',
			'end' => '88277633',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Hjurp-001'
		),
		'ENSMUST00000065420' => array(
			'start' => '88264828',
			'end' => '88277557',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Hjurp-002'
		),
		'ENSMUST00000126739' => array(
			'start' => '88274712',
			'end' => '88277579',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Hjurp-005'
		),
		'ENSMUST00000127446' => array(
			'start' => '88266349',
			'end' => '88269392',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Hjurp-004'
		),
		'ENSMUST00000128532' => array(
			'start' => '88269337',
			'end' => '88273119',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Hjurp-007'
		),
		'ENSMUST00000147393' => array(
			'start' => '88264978',
			'end' => '88277506',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Hjurp-003'
		),
		'ENSMUST00000148384' => array(
			'start' => '88269378',
			'end' => '88270947',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Hjurp-006'
		),
		'ENSMUST00000061013' => array(
			'start' => '88227020',
			'end' => '88262289',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mroh2a-201'
		),
		'ENSMUST00000113130' => array(
			'start' => '88227031',
			'end' => '88262289',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mroh2a-001'
		),
		'ENSMUST00000135948' => array(
			'start' => '88257758',
			'end' => '88260169',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mroh2a-003'
		),
		'ENSMUST00000142632' => array(
			'start' => '88238108',
			'end' => '88240937',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Mroh2a-004'
		),
		'ENSMUST00000148474' => array(
			'start' => '88226986',
			'end' => '88233461',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mroh2a-002'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007H9_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007H9_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044783' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000079429' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Brain',
			(int) 15 => 'Muscle',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Brain',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Brain',
			(int) 23 => 'Ovary',
			(int) 24 => 'Adipose',
			(int) 25 => 'Bladder',
			(int) 26 => 'Brain',
			(int) 27 => 'Breast',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Muscle',
			(int) 32 => 'Ovary',
			(int) 33 => 'Placenta',
			(int) 34 => 'Testis',
			(int) 35 => 'Adrenal',
			(int) 36 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000123485' => 'Holliday junction recognition protein',
	'ENSG00000185038' => 'maestro heat-like repeat family member 2A',
	'ENSMUSG00000044783' => 'Holliday junction recognition protein',
	'ENSMUSG00000079429' => 'maestro heat-like repeat family member 2A'
)
$gene_name_arr = array(
	'ENSG00000123485' => 'HJURP',
	'ENSG00000185038' => 'MROH2A',
	'ENSMUSG00000044783' => 'Hjurp',
	'ENSMUSG00000079429' => 'Mroh2a'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007H9_0001',
			'tax_id' => '9606',
			'chromosome' => '2',
			'seq_start' => '233775679',
			'seq_end' => '233854566',
			'region_length' => '78887',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000185038-ENSG00000123485'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007H9_0002',
			'tax_id' => '10090',
			'chromosome' => '1',
			'seq_start' => '88226986',
			'seq_end' => '88277633',
			'region_length' => '50647',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000079429-ENSMUSG00000044783'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 3 => 'Adrenal',
	(int) 6 => 'Bladder',
	(int) 10 => 'Brain',
	(int) 18 => 'Breast',
	(int) 23 => 'Colon',
	(int) 27 => 'Heart',
	(int) 30 => 'Kidney',
	(int) 35 => 'Liver',
	(int) 42 => 'Lung',
	(int) 47 => 'Muscle',
	(int) 53 => 'Ovary',
	(int) 60 => 'Placenta',
	(int) 67 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 29
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000373395' => array(
		'start' => '233844225',
		'end' => '233846135',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'HJURP-003'
	),
	'ENST00000411486' => array(
		'start' => '233836703',
		'end' => '233854566',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'HJURP-001'
	),
	'ENST00000414924' => array(
		'start' => '233840815',
		'end' => '233854566',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'HJURP-007'
	),
	'ENST00000432087' => array(
		'start' => '233836701',
		'end' => '233854566',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'HJURP-201'
	),
	'ENST00000433484' => array(
		'start' => '233833416',
		'end' => '233840738',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'HJURP-005'
	),
	'ENST00000434039' => array(
		'start' => '233841893',
		'end' => '233845799',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'HJURP-008'
	),
	'ENST00000441687' => array(
		'start' => '233836701',
		'end' => '233854566',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'HJURP-202'
	),
	'ENST00000453122' => array(
		'start' => '233842116',
		'end' => '233854535',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'HJURP-006'
	),
	'ENST00000454020' => array(
		'start' => '233841851',
		'end' => '233854474',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'HJURP-002'
	),
	'ENST00000389758' => array(
		'start' => '233778330',
		'end' => '233833423',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MROH2A-001'
	),
	'ENST00000428446' => array(
		'start' => '233775724',
		'end' => '233779782',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MROH2A-007'
	),
	'ENST00000430892' => array(
		'start' => '233775724',
		'end' => '233779782',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MROH2A-006'
	),
	'ENST00000454283' => array(
		'start' => '233775724',
		'end' => '233779782',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MROH2A-008'
	),
	'ENST00000477506' => array(
		'start' => '233796288',
		'end' => '233802468',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MROH2A-003'
	),
	'ENST00000480634' => array(
		'start' => '233779671',
		'end' => '233793817',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MROH2A-002'
	),
	'ENST00000487979' => array(
		'start' => '233828555',
		'end' => '233833418',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MROH2A-005'
	),
	'ENST00000610772' => array(
		'start' => '233775679',
		'end' => '233833423',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MROH2A-201'
	),
	'ENSMUST00000054674' => array(
		'start' => '88262471',
		'end' => '88277633',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Hjurp-001'
	),
	'ENSMUST00000065420' => array(
		'start' => '88264828',
		'end' => '88277557',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Hjurp-002'
	),
	'ENSMUST00000126739' => array(
		'start' => '88274712',
		'end' => '88277579',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Hjurp-005'
	),
	'ENSMUST00000127446' => array(
		'start' => '88266349',
		'end' => '88269392',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Hjurp-004'
	),
	'ENSMUST00000128532' => array(
		'start' => '88269337',
		'end' => '88273119',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Hjurp-007'
	),
	'ENSMUST00000147393' => array(
		'start' => '88264978',
		'end' => '88277506',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Hjurp-003'
	),
	'ENSMUST00000148384' => array(
		'start' => '88269378',
		'end' => '88270947',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Hjurp-006'
	),
	'ENSMUST00000061013' => array(
		'start' => '88227020',
		'end' => '88262289',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mroh2a-201'
	),
	'ENSMUST00000113130' => array(
		'start' => '88227031',
		'end' => '88262289',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mroh2a-001'
	),
	'ENSMUST00000135948' => array(
		'start' => '88257758',
		'end' => '88260169',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mroh2a-003'
	),
	'ENSMUST00000142632' => array(
		'start' => '88238108',
		'end' => '88240937',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Mroh2a-004'
	),
	'ENSMUST00000148474' => array(
		'start' => '88226986',
		'end' => '88233461',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mroh2a-002'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007H9_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044783' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000079429' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Brain',
			(int) 15 => 'Muscle',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Brain',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Brain',
			(int) 23 => 'Ovary',
			(int) 24 => 'Adipose',
			(int) 25 => 'Bladder',
			(int) 26 => 'Brain',
			(int) 27 => 'Breast',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Muscle',
			(int) 32 => 'Ovary',
			(int) 33 => 'Placenta',
			(int) 34 => 'Testis',
			(int) 35 => 'Adrenal',
			(int) 36 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007H9_0001',
		'tax_id' => '9606',
		'chromosome' => '2',
		'seq_start' => '233775679',
		'seq_end' => '233854566',
		'region_length' => '78887',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000185038-ENSG00000123485'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007H9_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000123485' => 'Holliday junction recognition protein',
		'ENSG00000185038' => 'maestro heat-like repeat family member 2A',
		'ENSMUSG00000044783' => 'Holliday junction recognition protein',
		'ENSMUSG00000079429' => 'maestro heat-like repeat family member 2A'
	),
	'gene_name_arr' => array(
		'ENSG00000123485' => 'HJURP',
		'ENSG00000185038' => 'MROH2A',
		'ENSMUSG00000044783' => 'Hjurp',
		'ENSMUSG00000079429' => 'Mroh2a'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 3 => 'Adrenal',
		(int) 6 => 'Bladder',
		(int) 10 => 'Brain',
		(int) 18 => 'Breast',
		(int) 23 => 'Colon',
		(int) 27 => 'Heart',
		(int) 30 => 'Kidney',
		(int) 35 => 'Liver',
		(int) 42 => 'Lung',
		(int) 47 => 'Muscle',
		(int) 53 => 'Ovary',
		(int) 60 => 'Placenta',
		(int) 67 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 29,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000373395' => array(
			'start' => '233844225',
			'end' => '233846135',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'HJURP-003'
		),
		'ENST00000411486' => array(
			'start' => '233836703',
			'end' => '233854566',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'HJURP-001'
		),
		'ENST00000414924' => array(
			'start' => '233840815',
			'end' => '233854566',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'HJURP-007'
		),
		'ENST00000432087' => array(
			'start' => '233836701',
			'end' => '233854566',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'HJURP-201'
		),
		'ENST00000433484' => array(
			'start' => '233833416',
			'end' => '233840738',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'HJURP-005'
		),
		'ENST00000434039' => array(
			'start' => '233841893',
			'end' => '233845799',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'HJURP-008'
		),
		'ENST00000441687' => array(
			'start' => '233836701',
			'end' => '233854566',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'HJURP-202'
		),
		'ENST00000453122' => array(
			'start' => '233842116',
			'end' => '233854535',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'HJURP-006'
		),
		'ENST00000454020' => array(
			'start' => '233841851',
			'end' => '233854474',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'HJURP-002'
		),
		'ENST00000389758' => array(
			'start' => '233778330',
			'end' => '233833423',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MROH2A-001'
		),
		'ENST00000428446' => array(
			'start' => '233775724',
			'end' => '233779782',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MROH2A-007'
		),
		'ENST00000430892' => array(
			'start' => '233775724',
			'end' => '233779782',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MROH2A-006'
		),
		'ENST00000454283' => array(
			'start' => '233775724',
			'end' => '233779782',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MROH2A-008'
		),
		'ENST00000477506' => array(
			'start' => '233796288',
			'end' => '233802468',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MROH2A-003'
		),
		'ENST00000480634' => array(
			'start' => '233779671',
			'end' => '233793817',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MROH2A-002'
		),
		'ENST00000487979' => array(
			'start' => '233828555',
			'end' => '233833418',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MROH2A-005'
		),
		'ENST00000610772' => array(
			'start' => '233775679',
			'end' => '233833423',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MROH2A-201'
		),
		'ENSMUST00000054674' => array(
			'start' => '88262471',
			'end' => '88277633',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Hjurp-001'
		),
		'ENSMUST00000065420' => array(
			'start' => '88264828',
			'end' => '88277557',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Hjurp-002'
		),
		'ENSMUST00000126739' => array(
			'start' => '88274712',
			'end' => '88277579',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Hjurp-005'
		),
		'ENSMUST00000127446' => array(
			'start' => '88266349',
			'end' => '88269392',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Hjurp-004'
		),
		'ENSMUST00000128532' => array(
			'start' => '88269337',
			'end' => '88273119',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Hjurp-007'
		),
		'ENSMUST00000147393' => array(
			'start' => '88264978',
			'end' => '88277506',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Hjurp-003'
		),
		'ENSMUST00000148384' => array(
			'start' => '88269378',
			'end' => '88270947',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Hjurp-006'
		),
		'ENSMUST00000061013' => array(
			'start' => '88227020',
			'end' => '88262289',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mroh2a-201'
		),
		'ENSMUST00000113130' => array(
			'start' => '88227031',
			'end' => '88262289',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mroh2a-001'
		),
		'ENSMUST00000135948' => array(
			'start' => '88257758',
			'end' => '88260169',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mroh2a-003'
		),
		'ENSMUST00000142632' => array(
			'start' => '88238108',
			'end' => '88240937',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Mroh2a-004'
		),
		'ENSMUST00000148474' => array(
			'start' => '88226986',
			'end' => '88233461',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mroh2a-002'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007H9_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007H9_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044783' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000079429' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Brain',
			(int) 15 => 'Muscle',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Brain',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Brain',
			(int) 23 => 'Ovary',
			(int) 24 => 'Adipose',
			(int) 25 => 'Bladder',
			(int) 26 => 'Brain',
			(int) 27 => 'Breast',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Muscle',
			(int) 32 => 'Ovary',
			(int) 33 => 'Placenta',
			(int) 34 => 'Testis',
			(int) 35 => 'Adrenal',
			(int) 36 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000123485' => 'Holliday junction recognition protein',
	'ENSG00000185038' => 'maestro heat-like repeat family member 2A',
	'ENSMUSG00000044783' => 'Holliday junction recognition protein',
	'ENSMUSG00000079429' => 'maestro heat-like repeat family member 2A'
)
$gene_name_arr = array(
	'ENSG00000123485' => 'HJURP',
	'ENSG00000185038' => 'MROH2A',
	'ENSMUSG00000044783' => 'Hjurp',
	'ENSMUSG00000079429' => 'Mroh2a'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007H9_0001',
			'tax_id' => '9606',
			'chromosome' => '2',
			'seq_start' => '233775679',
			'seq_end' => '233854566',
			'region_length' => '78887',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000185038-ENSG00000123485'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007H9_0002',
			'tax_id' => '10090',
			'chromosome' => '1',
			'seq_start' => '88226986',
			'seq_end' => '88277633',
			'region_length' => '50647',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000079429-ENSMUSG00000044783'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 3 => 'Adrenal',
	(int) 6 => 'Bladder',
	(int) 10 => 'Brain',
	(int) 18 => 'Breast',
	(int) 23 => 'Colon',
	(int) 27 => 'Heart',
	(int) 30 => 'Kidney',
	(int) 35 => 'Liver',
	(int) 42 => 'Lung',
	(int) 47 => 'Muscle',
	(int) 53 => 'Ovary',
	(int) 60 => 'Placenta',
	(int) 67 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 29
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000373395' => array(
		'start' => '233844225',
		'end' => '233846135',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'HJURP-003'
	),
	'ENST00000411486' => array(
		'start' => '233836703',
		'end' => '233854566',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'HJURP-001'
	),
	'ENST00000414924' => array(
		'start' => '233840815',
		'end' => '233854566',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'HJURP-007'
	),
	'ENST00000432087' => array(
		'start' => '233836701',
		'end' => '233854566',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'HJURP-201'
	),
	'ENST00000433484' => array(
		'start' => '233833416',
		'end' => '233840738',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'HJURP-005'
	),
	'ENST00000434039' => array(
		'start' => '233841893',
		'end' => '233845799',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'HJURP-008'
	),
	'ENST00000441687' => array(
		'start' => '233836701',
		'end' => '233854566',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'HJURP-202'
	),
	'ENST00000453122' => array(
		'start' => '233842116',
		'end' => '233854535',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'HJURP-006'
	),
	'ENST00000454020' => array(
		'start' => '233841851',
		'end' => '233854474',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'HJURP-002'
	),
	'ENST00000389758' => array(
		'start' => '233778330',
		'end' => '233833423',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MROH2A-001'
	),
	'ENST00000428446' => array(
		'start' => '233775724',
		'end' => '233779782',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MROH2A-007'
	),
	'ENST00000430892' => array(
		'start' => '233775724',
		'end' => '233779782',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MROH2A-006'
	),
	'ENST00000454283' => array(
		'start' => '233775724',
		'end' => '233779782',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MROH2A-008'
	),
	'ENST00000477506' => array(
		'start' => '233796288',
		'end' => '233802468',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MROH2A-003'
	),
	'ENST00000480634' => array(
		'start' => '233779671',
		'end' => '233793817',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MROH2A-002'
	),
	'ENST00000487979' => array(
		'start' => '233828555',
		'end' => '233833418',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MROH2A-005'
	),
	'ENST00000610772' => array(
		'start' => '233775679',
		'end' => '233833423',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MROH2A-201'
	),
	'ENSMUST00000054674' => array(
		'start' => '88262471',
		'end' => '88277633',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Hjurp-001'
	),
	'ENSMUST00000065420' => array(
		'start' => '88264828',
		'end' => '88277557',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Hjurp-002'
	),
	'ENSMUST00000126739' => array(
		'start' => '88274712',
		'end' => '88277579',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Hjurp-005'
	),
	'ENSMUST00000127446' => array(
		'start' => '88266349',
		'end' => '88269392',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Hjurp-004'
	),
	'ENSMUST00000128532' => array(
		'start' => '88269337',
		'end' => '88273119',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Hjurp-007'
	),
	'ENSMUST00000147393' => array(
		'start' => '88264978',
		'end' => '88277506',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Hjurp-003'
	),
	'ENSMUST00000148384' => array(
		'start' => '88269378',
		'end' => '88270947',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Hjurp-006'
	),
	'ENSMUST00000061013' => array(
		'start' => '88227020',
		'end' => '88262289',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mroh2a-201'
	),
	'ENSMUST00000113130' => array(
		'start' => '88227031',
		'end' => '88262289',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mroh2a-001'
	),
	'ENSMUST00000135948' => array(
		'start' => '88257758',
		'end' => '88260169',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mroh2a-003'
	),
	'ENSMUST00000142632' => array(
		'start' => '88238108',
		'end' => '88240937',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Mroh2a-004'
	),
	'ENSMUST00000148474' => array(
		'start' => '88226986',
		'end' => '88233461',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mroh2a-002'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007H9_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044783' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000079429' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Brain',
			(int) 15 => 'Muscle',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Brain',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Brain',
			(int) 23 => 'Ovary',
			(int) 24 => 'Adipose',
			(int) 25 => 'Bladder',
			(int) 26 => 'Brain',
			(int) 27 => 'Breast',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Muscle',
			(int) 32 => 'Ovary',
			(int) 33 => 'Placenta',
			(int) 34 => 'Testis',
			(int) 35 => 'Adrenal',
			(int) 36 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007H9_0001',
		'tax_id' => '9606',
		'chromosome' => '2',
		'seq_start' => '233775679',
		'seq_end' => '233854566',
		'region_length' => '78887',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000185038-ENSG00000123485'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSG00000185038-ENSG00000123485		CGP	9606	2:233775679-233854566
Gene		Transcript	Position	Biotype

Source ID	Type	Tax ID	Position
ENSMUSG00000079429-ENSMUSG00000044783	CGP	10090	1:88226986-88277633
Gene	Transcript	Position	Biotype
ENSMUSG00000044783 (Hjurp) Holliday junction recognition protein	ENSMUST00000054674 (Hjurp-001)	88262471-88277633	protein_coding
	ENSMUST00000065420 (Hjurp-002)	88264828-88277557	protein_coding
	ENSMUST00000126739 (Hjurp-005)	88274712-88277579	retained_intron
	ENSMUST00000127446 (Hjurp-004)	88266349-88269392	protein_coding
	ENSMUST00000128532 (Hjurp-007)	88269337-88273119	retained_intron
	ENSMUST00000147393 (Hjurp-003)	88264978-88277506	protein_coding
	ENSMUST00000148384 (Hjurp-006)	88269378-88270947	retained_intron
ENSMUSG00000079429 (Mroh2a) maestro heat-like repeat family member 2A	ENSMUST00000061013 (Mroh2a-201)	88227020-88262289	protein_coding
	ENSMUST00000113130 (Mroh2a-001)	88227031-88262289	protein_coding
	ENSMUST00000135948 (Mroh2a-003)	88257758-88260169	protein_coding
	ENSMUST00000142632 (Mroh2a-004)	88238108-88240937	retained_intron
	ENSMUST00000148474 (Mroh2a-002)	88226986-88233461	processed_transcript

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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