C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Holliday junction recognition protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044783 Hjurp 10090 - 1:88262471-88277633 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054674 Hjurp-001 88262471-88277633 protein_coding
  ENSMUST00000065420 Hjurp-002 88264828-88277557 protein_coding
  ENSMUST00000126739 Hjurp-005 88274712-88277579 retained_intron
  ENSMUST00000127446 Hjurp-004 88266349-88269392 protein_coding
  ENSMUST00000128532 Hjurp-007 88269337-88273119 retained_intron
  ENSMUST00000147393 Hjurp-003 88264978-88277506 protein_coding
  ENSMUST00000148384 Hjurp-006 88269378-88270947 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054674ENSMUST00000065420ENSMUST00000126739
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054674 9.540±6.90 5.990±0.01 29.926±4.35 36.630±26.62 9.125±3.77 12.322±7.42 2.287±0.93 3.967±1.47 28.004±18.03 13.302±5.77 1.507±0.35 33.695±15.41 19.790±17.61 7.321±3.21
ENSMUST00000065420 N/A N/A N/A 3.387±0.00 N/A N/A N/A N/A N/A N/A 1.122±0.00 21.836±1.71 5.680±3.04 7.984±0.00
ENSMUST00000126739 N/A N/A N/A 6.313±5.03 N/A N/A N/A N/A N/A N/A 0.747±0.00 11.795±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H9 CIL_0007H9_0002 CGP 1:88226986-88277633
CIL_0007H4 CIL_0007H4_0002 CGP 1:88262471-88389293

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 IDA chromosome, centromeric region
GO:0000777 IEA condensed chromosome kinetochore
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0007059 IEA chromosome segregation
GO:0034080 IEA CENP-A containing nucleosome assembly
GO:0042393 IEA histone binding
GO:0042802 IEA identical protein binding
GO:0043254 IEA regulation of protein complex assembly
GO:0051101 IEA regulation of DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000123485 HJURP Holliday junction recognition protein protein_coding Homo_sapiens

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