C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007W9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1643 VISTA 9606 5:125015470-125618494
GeneTranscriptPositionBiotype
ENSG00000222107 (RN7SKP117)
RNA, 7SK small nuclear pseudogene 117 		ENST00000410175 (RN7SKP117-201) 125350868-125351131 misc_RNA
ENSG00000249365 (RP11-508M8.1)
 ENST00000512965 (RP11-508M8.1-001) 125108204-125149929 lincRNA
ENSG00000249677 (RP11-395P13.3)
 ENST00000502275 (RP11-395P13.3-001) 125370165-125370924 lincRNA
ENSG00000249932 (RP11-395P13.2)
 ENST00000507341 (RP11-395P13.2-001) 125368568-125369149 lincRNA
ENSG00000250194 (RP11-257I8.1)
 ENST00000508858 (RP11-257I8.1-001) 125074665-125074980 processed_pseudogene
ENSG00000250269 (RP11-395P13.5)
 ENST00000511583 (RP11-395P13.5-001) 125382859-125383455 lincRNA
ENSG00000250402 (RP11-395P13.4)
 ENST00000511631 (RP11-395P13.4-001) 125376834-125377439 lincRNA
ENSG00000250411 (RP11-257I8.2)
 ENST00000513915 (RP11-257I8.2-001) 125036831-125042239 lincRNA
ENSG00000250721 (HMGB1P22)
high mobility group box 1 pseudogene 22 		ENST00000505315 (HMGB1P22-001) 125265528-125265651 processed_pseudogene
ENSG00000251554 (RP11-395P13.6)
 ENST00000509010 (RP11-395P13.6-001) 125395379-125395980 lincRNA
ENSG00000260192 (RP11-756H20.1)
 ENST00000564199 (RP11-756H20.1-001) 125493261-125602227 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
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Structures from Ensembl
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CIL_0007W9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1643 VISTA 10090 18:55183488-55786878
GeneTranscriptPositionBiotype
ENSMUSG00000092702 (Gm24514)
predicted gene, 24514 		ENSMUST00000174961 (Gm24514-201) 55622636-55622920 misc_RNA
ENSMUSG00000098119 (Gm26959)
predicted gene, 26959 		ENSMUST00000182376 (Gm26959-001) 55745251-55746228 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisCIL_0007W9_0001ENSG00000222107ENST00000410175ENSG00000249365ENST00000512965ENSG00000249677ENST00000502275ENSG00000249932ENST00000507341ENSG00000250194ENST00000508858ENSG00000250269ENST00000511583ENSG00000250402ENST00000511631ENSG00000250411ENST00000513915ENSG00000250721ENST00000505315ENSG00000251554ENST00000509010ENSG00000260192ENST00000564199CIL_0007W9_0002ENSMUSG00000092702ENSMUST00000174961ENSMUSG00000098119ENSMUST00000182376
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisCIL_0007W9_0001ENSG00000222107ENST00000410175ENSG00000249365ENST00000512965ENSG00000249677ENST00000502275ENSG00000249932ENST00000507341ENSG00000250194ENST00000508858ENSG00000250269ENST00000511583ENSG00000250402ENST00000511631ENSG00000250411ENST00000513915ENSG00000250721ENST00000505315ENSG00000251554ENST00000509010ENSG00000260192ENST00000564199CIL_0007W9_0002ENSMUSG00000092702ENSMUST00000174961ENSMUSG00000098119ENSMUST00000182376
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSG00000222107 ENST00000410175 N/A N/A N/A N/A 2.054±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000249365 ENST00000512965 N/A N/A N/A 0.396±0.00 N/A 0.027±0.00 N/A N/A N/A N/A N/A 0.150±0.04
ENSG00000249677 ENST00000502275 N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249932 ENST00000507341 0.015±0.00 0.211±0.00 0.229±0.00 0.151±0.00 0.158±0.00 0.056±0.00 0.080±0.00 0.024±0.00 0.148±0.00 N/A 0.039±0.00 0.013±0.00
ENSG00000250194 ENST00000508858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.177±0.00
ENSG00000250269 ENST00000511583 N/A N/A N/A N/A N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000250402 ENST00000511631 0.017±0.00 N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.602±0.29
ENSG00000250411 ENST00000513915 N/A 0.723±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.345±0.09
ENSG00000250721 ENST00000505315 N/A N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A N/A N/A N/A
ENSG00000251554 ENST00000509010 0.065±0.00 0.662±0.00 0.275±0.00 0.084±0.00 0.020±0.00 0.177±0.00 0.233±0.00 N/A N/A 0.037±0.00 0.086±0.00 0.296±0.00
ENSG00000260192 ENST00000564199 N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A 0.012±0.00 0.271±0.00 N/A N/A
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUSG00000092702 ENSMUST00000174961 1.909±1.10 0.268±0.00 N/A N/A 0.620±0.06 N/A 0.664±0.41 0.389±0.33 N/A N/A N/A 0.273±0.00
ENSMUSG00000098119 ENSMUST00000182376 N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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