C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 26959
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182376 Gm26959-001 ENSMUSG00000098119 10090 - 18:55745251-55746228 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000182376
Transcript ID Brain
ENSMUST00000182376 0.017±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041N CIL_00041N_0002 CGP 18:54888045-56503792
CIL_0007W9 CIL_0007W9_0002 VISTA 18:55183488-55786878
CIL_00083U CIL_00083U_0002 VISTA 18:55205853-55808602
CIL_00083S CIL_00083S_0002 VISTA 18:55218917-55821029

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 601
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 1e-33 148
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 599
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 601
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 601
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 424
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 473
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 433
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 568
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 401
ENST00000450472 GAPDHP14-001 processed_pseudogene Homo_sapiens 3e-32 143
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 1e-33 148
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 1e-33 148
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 1e-33 148
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 401
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 446
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 479
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 4e-32 143
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 484
ENST00000515281 GAPDHP70-001 processed_pseudogene Homo_sapiens 0 313

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