C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00085O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs366 VISTA 9606 1:215415579-216017032
GeneTranscriptPositionBiotype
ENSG00000042781 (USH2A)
Usher syndrome 2A (autosomal recessive, mild) 		ENST00000307340 (USH2A-002) 215622894-216423396 protein_coding
ENST00000366942 (USH2A-001) 216173946-216423396 protein_coding
ENST00000366943 (USH2A-201) 215622894-216423396 protein_coding
ENST00000463147 (USH2A-004) 216083380-216085108 retained_intron
ENST00000481786 (USH2A-003) 216083370-216089139 retained_intron
ENSG00000136636 (KCTD3)
potassium channel tetramerization domain containing 3 		ENST00000259154 (KCTD3-001) 215567392-215621807 protein_coding
ENST00000448333 (KCTD3-003) 215573786-215581179 protein_coding
ENST00000452413 (KCTD3-005) 215602170-215618951 protein_coding
ENST00000465650 (KCTD3-004) 215618705-215620203 processed_transcript
ENST00000495537 (KCTD3-002) 215618245-215621731 processed_transcript
CIL_00085O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs366 VISTA 10090 1:188583843-189185251
GeneTranscriptPositionBiotype
ENSMUSG00000026608 (Kctd3)
potassium channel tetramerisation domain containing 3 		ENSMUST00000085678 (Kctd3-201) 188971098-189007840 protein_coding
ENSMUSG00000026609 (Ush2a)
Usher syndrome 2A (autosomal recessive, mild) 		ENSMUST00000060479 (Ush2a-001) 188263034-188965041 protein_coding
ENSMUST00000124358 (Ush2a-002) 188262035-188452401 retained_intron
ENSMUST00000127077 (Ush2a-005) 188953744-188964965 protein_coding
ENSMUST00000142159 (Ush2a-004) 188537807-188678687 retained_intron
ENSMUST00000142189 (Ush2a-003) 188262023-188357520 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00085O_0001ENSG00000042781ENST00000307340ENST00000366942ENST00000366943ENST00000463147ENST00000481786ENSG00000136636ENST00000259154ENST00000448333ENST00000452413ENST00000465650ENST00000495537CIL_00085O_0002ENSMUSG00000026608ENSMUST00000085678ENSMUSG00000026609ENSMUST00000060479ENSMUST00000124358ENSMUST00000127077ENSMUST00000142159ENSMUST00000142189
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00085O_0001ENSG00000042781ENST00000307340ENST00000366942ENST00000366943ENSG00000136636ENST00000259154ENST00000495537CIL_00085O_0002ENSMUSG00000026608ENSMUST00000085678ENSMUSG00000026609ENSMUST00000060479ENSMUST00000124358ENSMUST00000127077ENSMUST00000142159ENSMUST00000142189
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000042781 ENST00000307340 0.002±0.00 0.010±0.00 0.010±0.00 0.023±0.00 0.027±0.00 0.020±0.02 0.036±0.03 0.008±0.00 0.055±0.05 0.004±0.00 N/A 0.009±0.01 0.002±0.00 0.220±0.18
ENST00000366942 N/A N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A 0.002±0.00 N/A
ENST00000366943 0.002±0.00 0.010±0.00 0.011±0.00 0.023±0.00 0.027±0.00 0.020±0.02 0.037±0.03 0.008±0.00 0.055±0.05 0.004±0.00 N/A 0.009±0.01 0.002±0.00 0.044±0.00
ENST00000463147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136636 ENST00000259154 11.598±0.00 6.106±0.00 3.204±0.00 8.168±4.99 8.974±3.73 8.779±2.37 2.797±1.99 10.443±0.93 7.643±2.78 6.665±0.00 1.290±0.00 8.495±3.44 10.907±4.34 13.193±0.87
ENST00000448333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495537 N/A N/A N/A 1.263±0.00 N/A N/A N/A N/A N/A 1.420±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026608 ENSMUST00000085678 17.598±3.77 13.236±1.72 9.153±2.52 22.079±0.88 12.806±6.96 17.005±1.65 4.523±0.51 6.973±1.70 6.517±3.25 9.479±2.87 3.417±1.04 19.472±6.77 16.721±2.03 6.445±1.99
ENSMUSG00000026609 ENSMUST00000060479 N/A 0.008±0.01 N/A 0.007±0.00 0.002±0.00 N/A N/A 0.004±0.00 0.005±0.00 0.010±0.00 N/A 0.036±0.02 0.012±0.01 N/A
ENSMUST00000124358 0.005±0.00 0.017±0.00 N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.040±0.01 N/A N/A
ENSMUST00000127077 N/A N/A 0.116±0.00 0.028±0.00 N/A N/A N/A N/A 0.019±0.01 N/A N/A N/A 0.201±0.10 N/A
ENSMUST00000142159 N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A 0.008±0.00 N/A N/A 0.051±0.01 N/A N/A
ENSMUST00000142189 N/A 0.123±0.02 N/A N/A N/A N/A 0.023±0.00 N/A N/A N/A N/A 0.121±0.00 N/A N/A

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