C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Usher syndrome 2A (autosomal recessive, mild)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142189 Ush2a-003 ENSMUSG00000026609 10090 + 1:188262023-188357520 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartOvaryENSMUST00000142189
Transcript ID Adrenal Heart Ovary
ENSMUST00000142189 0.123±0.02 0.023±0.00 0.121±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JY CIL_0007JY_0002 UCNEbase 1:186701249-188943182
CIL_0008DN CIL_0008DN_0002 VISTA 1:187818946-188419476

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307340 USH2A-002 protein_coding Homo_sapiens 0 593
ENST00000366942 USH2A-001 protein_coding Homo_sapiens 0 593
ENST00000366943 USH2A-201 protein_coding Homo_sapiens 0 593

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