C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box B1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000075721 foxb1b-001 ENSDARG00000053650 7955 + 7:30797568-30799750 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSDART00000075721
Transcript ID Brain
ENSDART00000075721 0.772±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LQ CIL_0007LQ_0004 UCNEbase 7:30789541-30833112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003690 IBA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IBA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IBA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007389 IBA pattern specification process
GO:0007420 IEP brain development
GO:0008134 IBA transcription factor binding
GO:0008301 IBA DNA binding, bending
GO:0009790 IBA embryo development
GO:0009888 IBA tissue development
GO:0043565 IEA sequence-specific DNA binding
GO:0051090 IBA regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396057 FOXB1-001 protein_coding Homo_sapiens 0 285

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