C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, alpha 4b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000104115 chrna4b-201 ENSDARG00000058393 7955 + 11:13210240-13232200 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverENSDART00000104115
Transcript ID Brain Liver
ENSDART00000104115 0.075±0.01 0.019±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0005216 IEA ion channel activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005886 IEA plasma membrane
GO:0005892 IDA acetylcholine-gated channel complex
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0015464 IDA acetylcholine receptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0030054 IEA cell junction
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067120 Chrna4-001 protein_coding Mus_musculus 0 673
ENSMUST00000108851 Chrna4-002 protein_coding Mus_musculus 0 673
ENSMUST00000124400 Chrna4-003 protein_coding Mus_musculus 1e-33 147
ENSMUST00000135766 Chrna4-004 nonsense_mediated_decay Mus_musculus 0 231

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