C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box B1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000125036 foxb1a-001 ENSDARG00000089042 7955 - 25:35200981-35202962 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000125036
Transcript ID Brain Heart Liver Muscle
ENSDART00000125036 6.187±3.23 0.048±0.00 0.039±0.00 0.122±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LQ CIL_0007LQ_0003 UCNEbase 25:35014795-35265159

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0001756 ISS somitogenesis
GO:0003677 IEA DNA binding
GO:0003690 IBA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IBA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0005667 IBA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007389 IBA pattern specification process
GO:0007412 ISS axon target recognition
GO:0008134 IBA transcription factor binding
GO:0008301 IBA DNA binding, bending
GO:0008542 ISS visual learning
GO:0009790 IBA embryo development
GO:0009888 IBA tissue development
GO:0021855 ISS hypothalamus cell migration
GO:0022029 ISS telencephalon cell migration
GO:0033504 ISS floor plate development
GO:0043524 ISS negative regulation of neuron apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0048513 IBA organ development
GO:0051090 IBA regulation of sequence-specific DNA binding transcription factor activity
GO:0061374 ISS mammillothalamic axonal tract development
GO:0061379 ISS inferior colliculus development
GO:0061381 ISS cell migration in diencephalon

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000376708 FOXB2-001 protein_coding Homo_sapiens 0 305
ENST00000396057 FOXB1-001 protein_coding Homo_sapiens 0 429

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