C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aggrecan b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000149917 acanb-001 ENSDARG00000045799 7955 - 25:19703944-19714370 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000149917
Transcript ID Brain Heart Liver Muscle
ENSDART00000149917 1.726±0.00 0.108±0.09 0.011±0.00 0.059±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005540 IEA hyaluronic acid binding
GO:0007155 IEA cell adhesion
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265077 VCAN-001 protein_coding Homo_sapiens 8e-34 152
ENST00000342785 VCAN-201 protein_coding Homo_sapiens 4e-34 152
ENST00000343200 VCAN-202 protein_coding Homo_sapiens 6e-34 152
ENST00000502527 VCAN-005 protein_coding Homo_sapiens 1e-34 152
ENST00000505615 VCAN-012 retained_intron Homo_sapiens 5e-35 152
ENST00000512590 VCAN-002 protein_coding Homo_sapiens 4e-34 152
ENST00000513016 VCAN-006 processed_transcript Homo_sapiens 5e-34 152

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