C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nerve growth factor receptor (TNFR superfamily, member 16)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000122 Ngfr-001 ENSMUSG00000000120 10090 - 11:95568818-95587735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000122
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000122 30.950±29.66 4.456±1.36 1.912±0.14 7.350±5.55 4.126±1.82 4.232±0.33 0.800±0.10 2.424±0.18 2.135±0.63 0.767±0.08 0.309±0.14 18.765±11.27 1.231±1.06 1.473±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QJ CIL_0007QJ_0002 VISTA 11:95039208-95641127
CIL_000877 CIL_000877_0002 VISTA 11:95055809-95658196
CIL_0009BV CIL_0009BV_0002 VISTA 11:95055825-95658170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005035 IDA death receptor activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007165 IEA signal transduction
GO:0007411 IMP axon guidance
GO:0007417 IMP central nervous system development
GO:0010468 IMP regulation of gene expression
GO:0012501 IDA programmed cell death
GO:0016048 IMP detection of temperature stimulus
GO:0021675 IMP nerve development
GO:0031069 IMP hair follicle morphogenesis
GO:0031625 IEA ubiquitin protein ligase binding
GO:0040037 IMP negative regulation of fibroblast growth factor receptor signaling pathway
GO:0042488 IMP positive regulation of odontogenesis of dentin-containing tooth
GO:0043588 IMP skin development
GO:0048146 IMP positive regulation of fibroblast proliferation
GO:0048406 IDA nerve growth factor binding
GO:0051799 IMP negative regulation of hair follicle development
GO:0097481 IDA neuronal postsynaptic density
GO:2001235 IDA positive regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000172229 NGFR-001 protein_coding Homo_sapiens 0 1561
ENST00000504201 NGFR-002 protein_coding Homo_sapiens 0 1448
ENST00000509200 NGFR-003 protein_coding Homo_sapiens 0 305

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