C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 1J
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002298 Ppm1j-001 ENSMUSG00000002228 10090 + 3:104781056-104786018 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002298
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002298 0.981±0.39 1.782±0.49 0.499±0.08 0.304±0.14 5.162±2.21 13.212±2.17 12.434±1.59 0.707±0.37 0.132±0.08 1.864±0.65 24.996±2.90 1.038±0.40 0.452±0.42 73.130±25.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000878 CIL_000878_0002 VISTA 3:104296935-104900599
CIL_0009BY CIL_0009BY_0002 VISTA 3:104296978-104900566

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004722 IDA protein serine/threonine phosphatase activity
GO:0005515 IPI protein binding
GO:0006470 IDA protein dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309276 PPM1J-001 protein_coding Homo_sapiens 0 1796
ENST00000464951 PPM1J-002 protein_coding Homo_sapiens 0 1192
ENST00000471038 RP11-426L16.10-001 processed_transcript Homo_sapiens 0 322
ENST00000471106 PPM1J-005 nonsense_mediated_decay Homo_sapiens 0 815
ENST00000482367 PPM1J-004 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000486709 PPM1J-003 retained_intron Homo_sapiens 0 307
ENST00000605933 RP11-426L16.10-003 protein_coding Homo_sapiens 0 532
ENST00000606505 RP11-426L16.10-002 protein_coding Homo_sapiens 0 532
ENST00000606954 RP11-426L16.10-005 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000607158 RP11-426L16.10-004 retained_intron Homo_sapiens 0 429

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