C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004072 Rpl8-201 ENSMUSG00000003970 10090 + 15:76904071-76906318 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004072
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004072 557.462±145.33 369.984±17.12 883.010±128.34 556.111±186.11 502.641±199.76 683.846±73.85 227.728±38.95 504.507±26.13 785.728±555.07 481.500±14.88 301.420±18.06 978.448±189.69 736.577±257.00 291.987±66.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099W CIL_00099W_0002 VISTA 15:76709335-77309403
CIL_00094Q CIL_00094Q_0002 VISTA 15:76736640-77338764
CIL_0008TT CIL_0008TT_0002 VISTA 15:76789079-77390092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0019843 IEA rRNA binding
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262584 RPL8-001 protein_coding Homo_sapiens 0 926
ENST00000394920 RPL8-002 protein_coding Homo_sapiens 0 917
ENST00000526668 RPL8-012 retained_intron Homo_sapiens 0 756
ENST00000527914 RPL8-013 protein_coding Homo_sapiens 0 416
ENST00000528296 RPL8-011 processed_transcript Homo_sapiens 0 405
ENST00000528957 RPL8-010 protein_coding Homo_sapiens 0 913
ENST00000529163 RPL8-008 processed_transcript Homo_sapiens 0 608
ENST00000529920 RPL8-004 nonsense_mediated_decay Homo_sapiens 0 372
ENST00000531975 RPL8-015 nonsense_mediated_decay Homo_sapiens 0 706
ENST00000533397 RPL8-016 protein_coding Homo_sapiens 0 390
ENST00000534781 RPL8-009 retained_intron Homo_sapiens 0 375

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