C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: citrate synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005826 Cs-201 ENSMUSG00000005683 10090 + 10:128337832-128362479 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005826
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005826 240.837±29.15 169.149±21.72 69.825±3.24 46.026±13.46 256.250±71.37 194.274±26.71 454.832±73.49 130.436±7.65 63.469±16.21 71.152±9.66 202.299±41.36 98.544±23.67 61.086±28.51 25.330±7.40

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004108 ISS citrate (Si)-synthase activity
GO:0005739 IDA mitochondrion
GO:0005759 ISS mitochondrial matrix
GO:0005975 ISS carbohydrate metabolic process
GO:0006099 IEA tricarboxylic acid cycle
GO:0044262 IEA cellular carbohydrate metabolic process
GO:0046912 IDA transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351328 CS-001 protein_coding Homo_sapiens 0 2109
ENST00000464192 RP11-446H18.1-001 processed_pseudogene Homo_sapiens 0 1066
ENST00000542324 CS-003 protein_coding Homo_sapiens 0 1847
ENST00000546585 CS-006 retained_intron Homo_sapiens 0 361
ENST00000546621 CS-005 retained_intron Homo_sapiens 0 798
ENST00000546891 CS-020 nonsense_mediated_decay Homo_sapiens 0 623
ENST00000546930 CS-032 protein_coding Homo_sapiens 0 287
ENST00000547283 CS-028 retained_intron Homo_sapiens 0 211
ENST00000547298 CS-035 protein_coding Homo_sapiens 0 645
ENST00000547423 RP11-977G19.10-002 protein_coding Homo_sapiens 3e-26 122
ENST00000547449 CS-026 retained_intron Homo_sapiens 0 449
ENST00000547912 CS-022 retained_intron Homo_sapiens 0 272
ENST00000548041 CS-033 protein_coding Homo_sapiens 0 553
ENST00000548567 CS-002 protein_coding Homo_sapiens 0 2008
ENST00000548746 CS-019 protein_coding Homo_sapiens 0 453
ENST00000548849 CS-023 nonsense_mediated_decay Homo_sapiens 0 780
ENST00000549143 CS-008 nonsense_mediated_decay Homo_sapiens 0 1890
ENST00000549221 CS-031 protein_coding Homo_sapiens 0 449
ENST00000549318 RP11-977G19.10-001 protein_coding Homo_sapiens 0 250
ENST00000550159 CS-029 protein_coding Homo_sapiens 0 448
ENST00000550655 CS-013 protein_coding Homo_sapiens 0 701
ENST00000550734 CS-018 protein_coding Homo_sapiens 0 686
ENST00000551137 CS-009 protein_coding Homo_sapiens 0 640
ENST00000551253 CS-036 protein_coding Homo_sapiens 0 689
ENST00000551430 CS-010 protein_coding Homo_sapiens 0 451
ENST00000551473 CS-011 protein_coding Homo_sapiens 0 658
ENST00000551936 CS-034 protein_coding Homo_sapiens 0 689
ENST00000551968 CS-027 protein_coding Homo_sapiens 0 370
ENST00000552222 CS-024 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000552688 CS-030 protein_coding Homo_sapiens 0 483
ENST00000614660 CTB-52I2.4-003 transcribed_processed_pseudogene Homo_sapiens 0 1596
ENST00000621646 CTB-52I2.4-002 processed_transcript Homo_sapiens 0 1600

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