C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009241 Tbx1-201 ENSMUSG00000009097 10090 - 16:18581713-18586969 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009241
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009241 0.799±0.59 0.097±0.04 0.979±0.04 0.349±0.15 2.465±1.34 0.466±0.16 0.288±0.13 0.187±0.15 0.023±0.02 8.480±1.23 3.195±0.44 1.800±1.03 0.176±0.09 1.332±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0002 VISTA 16:18254168-18857637
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0001568 IMP blood vessel development
GO:0001708 IGI cell fate specification
GO:0001755 IMP neural crest cell migration
GO:0001945 IMP lymph vessel development
GO:0001974 IGI blood vessel remodeling
GO:0003007 IMP heart morphogenesis
GO:0003151 IMP outflow tract morphogenesis
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0007368 IMP determination of left/right symmetry
GO:0007389 IMP pattern specification process
GO:0007498 IMP mesoderm development
GO:0007507 IMP heart development
GO:0007517 IMP muscle organ development
GO:0007605 IMP sensory perception of sound
GO:0008283 IDA cell proliferation
GO:0008284 IMP positive regulation of cell proliferation
GO:0009952 IMP anterior/posterior pattern specification
GO:0021644 IMP vagus nerve morphogenesis
GO:0030855 IMP epithelial cell differentiation
GO:0030878 IMP thyroid gland development
GO:0035176 IMP social behavior
GO:0035909 IMP aorta morphogenesis
GO:0042471 IMP ear morphogenesis
GO:0042472 IMP inner ear morphogenesis
GO:0042473 IMP outer ear morphogenesis
GO:0042474 IMP middle ear morphogenesis
GO:0042475 IMP odontogenesis of dentin-containing tooth
GO:0042693 IMP muscle cell fate commitment
GO:0042803 IEA protein homodimerization activity
GO:0043565 IEA sequence-specific DNA binding
GO:0045596 IMP negative regulation of cell differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048514 IMP blood vessel morphogenesis
GO:0048538 IMP thymus development
GO:0048644 IGI muscle organ morphogenesis
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0048703 IEA embryonic viscerocranium morphogenesis
GO:0048752 IGI semicircular canal morphogenesis
GO:0048844 IMP artery morphogenesis
GO:0050679 IMP positive regulation of epithelial cell proliferation
GO:0060017 IEA parathyroid gland development
GO:0060023 IEA soft palate development
GO:0060037 IMP pharyngeal system development
GO:0060325 IMP face morphogenesis
GO:0060415 IMP muscle tissue morphogenesis
GO:0060982 IMP coronary artery morphogenesis
GO:0070166 IMP enamel mineralization
GO:0071600 IMP otic vesicle morphogenesis
GO:0072513 IDA positive regulation of secondary heart field cardioblast proliferation
GO:0090103 IMP cochlea morphogenesis
GO:2000027 IMP regulation of organ morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329705 TBX1-002 protein_coding Homo_sapiens 0 987
ENST00000332710 TBX1-003 protein_coding Homo_sapiens 0 1373
ENST00000359500 TBX1-001 protein_coding Homo_sapiens 0 987
ENST00000475303 TBX1-004 retained_intron Homo_sapiens 0 257
ENST00000484336 TBX1-005 retained_intron Homo_sapiens 0 241
ENST00000621939 TBX1-201 protein_coding Homo_sapiens 0 987

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