C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 3 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000012580 Hps3-001 ENSMUSG00000027615 10090 - 3:19995945-20035315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000012580
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000012580 4.375±0.40 3.028±0.54 3.408±0.37 2.374±0.95 5.681±1.68 2.187±0.71 2.116±0.08 5.694±0.96 3.227±0.22 6.507±0.95 0.767±0.20 3.464±0.58 2.464±1.29 1.039±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089F CIL_00089F_0002 VISTA 3:19844419-20446014
CIL_0007F5 CIL_0007F5_0002 CGP 3:19957054-20035315

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0006996 IMP organelle organization
GO:0031084 IEA BLOC-2 complex
GO:0043473 IMP pigmentation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296051 HPS3-001 protein_coding Homo_sapiens 0 2878
ENST00000460120 HPS3-003 protein_coding Homo_sapiens 0 2196
ENST00000460822 HPS3-005 nonsense_mediated_decay Homo_sapiens 0 726
ENST00000462030 HPS3-002 retained_intron Homo_sapiens 0 1125
ENST00000486530 HPS3-004 retained_intron Homo_sapiens 0 1343

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