C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NFKB inhibitor interacting Ras-like protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017981 Nkiras2-001 ENSMUSG00000017837 10090 + 11:100622876-100627607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017981
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017981 37.863±4.94 26.083±1.14 32.440±3.34 54.750±1.41 28.023±2.81 57.237±6.31 41.187±7.96 27.170±2.02 17.129±1.71 33.626±1.40 14.672±1.93 32.967±2.68 29.168±3.43 105.708±6.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EX CIL_0006EX_0002 CGP 11:100574904-100620168
CIL_000429 CIL_000429_0003 CGP 11:100582818-100627607
CIL_0000KV CIL_0000KV_0003 CGP 11:100619244-100692455

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307641 NKIRAS2-010 protein_coding Homo_sapiens 0 817
ENST00000316082 NKIRAS2-008 protein_coding Homo_sapiens 0 499
ENST00000393879 NKIRAS2-009 retained_intron Homo_sapiens 0 651
ENST00000393880 NKIRAS2-002 protein_coding Homo_sapiens 0 819
ENST00000393881 NKIRAS2-003 protein_coding Homo_sapiens 0 819
ENST00000393885 NKIRAS2-001 protein_coding Homo_sapiens 0 843
ENST00000449471 NKIRAS2-006 protein_coding Homo_sapiens 0 350
ENST00000462043 NKIRAS2-013 protein_coding Homo_sapiens 0 348
ENST00000479407 NKIRAS2-007 protein_coding Homo_sapiens 0 438
ENST00000485789 NKIRAS2-005 nonsense_mediated_decay Homo_sapiens 0 448
ENST00000491638 NKIRAS2-004 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000585955 NKIRAS2-011 protein_coding Homo_sapiens 0 233
ENST00000587028 NKIRAS2-014 retained_intron Homo_sapiens 0 198
ENST00000587337 NKIRAS2-012 protein_coding Homo_sapiens 0 542

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