C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: epsilon-tubulin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019991 Tube1-201 ENSMUSG00000019845 10090 + 10:39134023-39151058 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019991
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019991 0.509±0.34 0.307±0.21 0.425±0.00 3.822±2.67 0.499±0.10 0.955±0.06 0.216±0.07 0.438±0.14 1.315±1.32 0.196±0.08 0.359±0.12 0.873±0.33 1.292±0.99 1.886±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005M9 CIL_0005M9_0002 CGP 10:39134023-39163794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368657 TUBE1-002 retained_intron Homo_sapiens 0 536
ENST00000368662 TUBE1-001 protein_coding Homo_sapiens 0 1500
ENST00000441191 TUBE1-003 processed_transcript Homo_sapiens 0 619
ENST00000603621 TUBE1-009 retained_intron Homo_sapiens 0 281
ENST00000603722 TUBE1-008 retained_intron Homo_sapiens 3e-36 156
ENST00000604743 TUBE1-007 nonsense_mediated_decay Homo_sapiens 0 754
ENST00000604814 TUBE1-004 processed_transcript Homo_sapiens 0 1284
ENST00000604967 TUBE1-005 nonsense_mediated_decay Homo_sapiens 0 220
ENST00000605457 TUBE1-006 nonsense_mediated_decay Homo_sapiens 0 769

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