C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GATS protein-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020699 Gatsl3-001 ENSMUSG00000020424 10090 + 11:4218225-4222409 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020699
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020699 13.326±9.16 5.585±1.37 8.896±1.47 0.568±0.23 6.656±1.18 4.356±0.81 3.371±1.29 6.227±0.28 0.789±0.22 10.063±2.71 0.821±0.47 6.117±2.44 21.706±20.91 2.273±1.10

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330168 RP1-130H16.18-005 nonsense_mediated_decay Homo_sapiens 0 926
ENST00000404953 GATSL3-002 protein_coding Homo_sapiens 0 739
ENST00000407689 GATSL3-001 protein_coding Homo_sapiens 0 1094
ENST00000415484 GATSL3-014 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000418047 RP1-130H16.18-002 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000421236 GATSL3-009 nonsense_mediated_decay Homo_sapiens 0 800
ENST00000425691 GATSL3-005 nonsense_mediated_decay Homo_sapiens 2e-38 163
ENST00000434291 RP1-130H16.18-001 protein_coding Homo_sapiens 0 276
ENST00000434987 RP1-130H16.18-003 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000440704 GATSL3-008 nonsense_mediated_decay Homo_sapiens 5e-34 148
ENST00000440839 GATSL3-013 nonsense_mediated_decay Homo_sapiens 8e-38 161
ENST00000447976 RP1-130H16.18-004 nonsense_mediated_decay Homo_sapiens 0 845
ENST00000463795 GATSL3-006 retained_intron Homo_sapiens 0 715
ENST00000471480 GATSL3-004 retained_intron Homo_sapiens 1e-36 158
ENST00000497605 GATSL3-007 retained_intron Homo_sapiens 3e-34 150
ENST00000498572 GATSL3-003 processed_transcript Homo_sapiens 3e-39 165

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