C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pentatricopeptide repeat domain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022153 Ptcd2-201 ENSMUSG00000021650 10090 - 13:99319649-99344678 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022153
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022153 9.800±1.05 14.565±2.64 10.271±0.76 10.004±2.05 9.125±2.36 16.332±4.29 17.751±1.63 16.066±1.27 12.369±2.18 7.145±1.25 10.044±0.45 8.694±2.27 9.517±2.79 6.542±1.82

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001822 IMP kidney development
GO:0001889 IMP liver development
GO:0005739 IDA mitochondrion
GO:0006397 IEA mRNA processing
GO:0007005 IMP mitochondrion organization
GO:0007507 IMP heart development
GO:0010468 IMP regulation of gene expression
GO:0044822 IEA poly(A) RNA binding
GO:0048747 IMP muscle fiber development
GO:0050684 IMP regulation of mRNA processing
GO:0055010 IMP ventricular cardiac muscle tissue morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308077 PTCD2-003 nonsense_mediated_decay Homo_sapiens 0 876
ENST00000380639 PTCD2-001 protein_coding Homo_sapiens 0 876
ENST00000460837 PTCD2-004 processed_transcript Homo_sapiens 0 490
ENST00000486995 PTCD2-002 nonsense_mediated_decay Homo_sapiens 0 833
ENST00000493283 PTCD2-005 processed_transcript Homo_sapiens 0 475
ENST00000503315 PTCD2-007 nonsense_mediated_decay Homo_sapiens 0 490
ENST00000503868 PTCD2-006 protein_coding Homo_sapiens 0 490
ENST00000510676 PTCD2-011 protein_coding Homo_sapiens 0 544
ENST00000511752 PTCD2-010 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000536805 PTCD2-201 protein_coding Homo_sapiens 0 490
ENST00000543322 PTCD2-202 protein_coding Homo_sapiens 0 490
ENST00000554393 PTCD2P1-001 processed_pseudogene Homo_sapiens 0 532

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