C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bridging integrator 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022680 Bin3-201 ENSMUSG00000022089 10090 + 14:70100145-70138191 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022680
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022680 8.275±2.01 8.831±0.93 14.051±1.52 10.189±1.32 9.123±1.02 2.759±0.41 8.206±0.87 10.089±5.83 8.507±0.56 2.439±0.26 10.918±2.30 13.663±1.93 16.332±2.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000U4 CIL_0000U4_0002 CGP 14:70077445-70138191

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000917 IEA barrier septum assembly
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005884 IDA actin filament
GO:0008104 ISS protein localization
GO:0009826 ISS unidimensional cell growth
GO:0010591 IMP regulation of lamellipodium assembly
GO:0014839 IMP myoblast migration involved in skeletal muscle regeneration
GO:0043403 IMP skeletal muscle tissue regeneration
GO:0048741 IMP skeletal muscle fiber development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000276416 BIN3-001 protein_coding Homo_sapiens 0 917
ENST00000399977 BIN3-003 protein_coding Homo_sapiens 0 699
ENST00000518366 BIN3-006 retained_intron Homo_sapiens 1e-39 167
ENST00000519335 BIN3-009 processed_transcript Homo_sapiens 0 822
ENST00000519513 BIN3-002 protein_coding Homo_sapiens 0 699
ENST00000519863 BIN3-012 processed_transcript Homo_sapiens 0 704
ENST00000520292 BIN3-011 protein_coding Homo_sapiens 0 412
ENST00000520489 BIN3-005 retained_intron Homo_sapiens 0 508
ENST00000521140 BIN3-010 retained_intron Homo_sapiens 0 383
ENST00000522687 BIN3-008 nonsense_mediated_decay Homo_sapiens 0 370

Loading