C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glyoxylate reductase 1 homolog (Arabidopsis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023189 Glyr1-201 ENSMUSG00000022536 10090 - 16:5013906-5049910 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023189
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023189 7.393±2.20 12.697±1.00 17.061±0.60 24.269±5.28 12.132±0.00 7.800±1.87 4.133±2.33 12.607±1.26 10.444±2.97 9.485±4.95 6.351±0.88 13.354±6.62 14.807±3.96 9.694±2.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001G7 CIL_0001G7_0002 CGP 16:5008730-5049910
CIL_00004T CIL_00004T_0002 CGP 16:5013906-5086285

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004616 IEA phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005634 IEA nucleus
GO:0006098 IEA pentose-phosphate shunt
GO:0035064 ISS methylated histone binding
GO:0051287 IEA NAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000055238 glyr1-201 protein_coding Danio_rerio 0 390
ENSDART00000055239 glyr1-001 protein_coding Danio_rerio 0 383
ENST00000296027 CXCL5-001 protein_coding Homo_sapiens 0 390
ENST00000321919 GLYR1-001 protein_coding Homo_sapiens 0 2483
ENST00000429893 RP5-1041C10.3-001 processed_pseudogene Homo_sapiens 0 1668
ENST00000436648 GLYR1-002 protein_coding Homo_sapiens 0 1591
ENST00000586095 GLYR1-013 retained_intron Homo_sapiens 2e-39 165
ENST00000586901 GLYR1-010 processed_transcript Homo_sapiens 0 712
ENST00000587297 GLYR1-009 protein_coding Homo_sapiens 0 756
ENST00000587875 GLYR1-011 retained_intron Homo_sapiens 0 470
ENST00000587936 GLYR1-006 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000588297 GLYR1-004 protein_coding Homo_sapiens 0 477
ENST00000588732 GLYR1-003 nonsense_mediated_decay Homo_sapiens 0 2156
ENST00000589389 GLYR1-005 protein_coding Homo_sapiens 0 1330
ENST00000591451 GLYR1-007 protein_coding Homo_sapiens 0 2481
ENST00000591846 GLYR1-008 retained_intron Homo_sapiens 0 241
ENST00000592120 UBN1-003 protein_coding Homo_sapiens 3e-36 158

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