C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023225 Grina-201 ENSMUSG00000022564 10090 + 15:76246807-76249904 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023225
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023225 506.087±283.91 172.505±36.71 102.445±12.36 116.708±29.30 284.060±100.45 79.309±26.83 45.495±6.12 409.358±42.44 185.081±85.41 125.124±9.37 70.183±5.96 131.465±59.68 41.285±22.43 305.129±144.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_0002GF CIL_0002GF_0002 CGP 15:76231174-76249904
CIL_0002GE CIL_0002GE_0002 CGP 15:76246807-76292572

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0016021 IEA integral component of membrane
GO:0032469 IDA endoplasmic reticulum calcium ion homeostasis
GO:0044325 IDA ion channel binding
GO:1902236 IDA negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313269 GRINA-201 protein_coding Homo_sapiens 0 1345
ENST00000395068 GRINA-001 protein_coding Homo_sapiens 0 1345
ENST00000525513 GRINA-008 retained_intron Homo_sapiens 0 287
ENST00000527194 GRINA-010 protein_coding Homo_sapiens 0 706
ENST00000529301 GRINA-004 protein_coding Homo_sapiens 0 676
ENST00000530898 GRINA-005 protein_coding Homo_sapiens 0 268
ENST00000531992 GRINA-006 retained_intron Homo_sapiens 0 226
ENST00000533044 GRINA-009 protein_coding Homo_sapiens 0 582
ENST00000533377 GRINA-011 retained_intron Homo_sapiens 0 638
ENST00000534791 GRINA-007 protein_coding Homo_sapiens 0 608

Loading