C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023370 Boc-201 ENSMUSG00000022687 10090 - 16:44485045-44558870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023370
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023370 6.664±2.38 32.227±4.47 10.435±1.62 5.435±2.55 6.029±0.94 13.037±1.05 1.424±0.45 3.372±0.55 0.195±0.14 10.391±1.35 0.811±0.08 13.295±2.60 0.804±0.76 1.569±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UB CIL_0008UB_0002 VISTA 16:44376757-44981297

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 ISA integral component of plasma membrane
GO:0007224 IDA smoothened signaling pathway
GO:0007411 IMP axon guidance
GO:0009986 TAS cell surface
GO:0016202 ISO regulation of striated muscle tissue development
GO:0016337 TAS single organismal cell-cell adhesion
GO:0030030 IMP cell projection organization
GO:0030424 IDA axon
GO:0030426 IDA growth cone
GO:0043025 IDA neuronal cell body
GO:0044295 IEA axonal growth cone
GO:0045663 IMP positive regulation of myoblast differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273395 BOC-003 protein_coding Homo_sapiens 0 3432
ENST00000355385 BOC-201 protein_coding Homo_sapiens 0 3445
ENST00000393845 CFAP44-201 protein_coding Homo_sapiens 5.60519e-45 189
ENST00000463971 BOC-014 retained_intron Homo_sapiens 0 396
ENST00000466059 BOC-006 retained_intron Homo_sapiens 0 2590
ENST00000471963 BOC-005 retained_intron Homo_sapiens 0 789
ENST00000477178 BOC-012 processed_transcript Homo_sapiens 0 399
ENST00000479182 BOC-007 retained_intron Homo_sapiens 0 2283
ENST00000484034 BOC-004 protein_coding Homo_sapiens 0 388
ENST00000485230 BOC-002 protein_coding Homo_sapiens 0 388
ENST00000489244 CFAP44-011 nonsense_mediated_decay Homo_sapiens 2.8026e-45 189
ENST00000495514 BOC-001 protein_coding Homo_sapiens 0 3445
ENST00000497495 BOC-013 processed_transcript Homo_sapiens 0 507
ENST00000498710 BOC-011 protein_coding Homo_sapiens 5.04467e-44 182

Loading