C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal cell-derived factor 2-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023453 Sdf2l1-001 ENSMUSG00000022769 10090 - 16:17130138-17132383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023453
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023453 14.330±4.22 38.130±4.41 8.099±1.49 7.620±1.56 15.521±8.12 56.903±6.52 4.486±0.09 11.590±1.07 28.373±6.19 16.814±2.88 1.562±0.40 56.308±23.64 40.809±8.47 37.811±8.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PT CIL_0008PT_0002 VISTA 16:16870677-17470725

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 ISA endoplasmic reticulum
GO:0016020 ISO membrane
GO:0034976 ISO response to endoplasmic reticulum stress
GO:0042981 ISO regulation of apoptotic process
GO:0051087 ISO chaperone binding
GO:0051117 ISO ATPase binding
GO:0051787 ISO misfolded protein binding
GO:0071218 ISO cellular response to misfolded protein
GO:0071712 ISO ER-associated misfolded protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000248958 SDF2L1-001 protein_coding Homo_sapiens 0 760
ENST00000466935 SDF2L1-002 retained_intron Homo_sapiens 0 381

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