C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023502 Snx4-201 ENSMUSG00000022808 10090 + 16:33251456-33299562 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023502
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023502 11.625±3.33 6.669±2.64 12.190±1.53 12.632±4.99 9.428±2.41 7.845±1.75 8.102±1.33 11.495±1.85 7.648±1.85 22.603±3.17 5.103±0.80 12.677±6.37 29.658±6.85 8.182±2.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004V6 CIL_0004V6_0002 CGP 16:33251456-33503903

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005154 IEA epidermal growth factor receptor binding
GO:0005158 IEA insulin receptor binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IBA endosome
GO:0005868 ISS cytoplasmic dynein complex
GO:0006886 IBA intracellular protein transport
GO:0015031 ISS protein transport
GO:0016020 IEA membrane
GO:0031901 ISS early endosome membrane
GO:0032456 ISS endocytic recycling
GO:0035091 ISS phosphatidylinositol binding
GO:0043234 IEA protein complex
GO:1990459 IEA transferrin receptor binding
GO:1990460 IEA leptin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251775 SNX4-001 protein_coding Homo_sapiens 0 2224
ENST00000465505 SNX4-005 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000471751 SNX4-002 nonsense_mediated_decay Homo_sapiens 0 1519
ENST00000473417 SNX4-003 processed_transcript Homo_sapiens 0 630
ENST00000482965 SNX4-004 processed_transcript Homo_sapiens 0 523

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