C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: succinate dehydrogenase complex assembly factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025570 Sdhaf2-201 ENSMUSG00000024668 10090 - 19:10500513-10525209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025570
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025570 9.505±0.24 8.288±0.48 10.867±0.00 7.499±4.09 8.436±1.39 6.569±1.01 11.516±1.05 7.942±0.83 7.814±3.51 7.064±0.28 3.968±2.37 8.197±2.06 10.521±1.11 2.899±1.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WT CIL_0007WT_0002 VISTA 19:10121785-10724671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 ISS mitochondrion
GO:0006121 ISS mitochondrial electron transport, succinate to ubiquinone
GO:0006470 IMP protein dephosphorylation
GO:0010719 IMP negative regulation of epithelial to mesenchymal transition
GO:0018293 ISS protein-FAD linkage
GO:0090090 IMP negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301761 SDHAF2-001 protein_coding Homo_sapiens 0 654
ENST00000359614 SDHAF2-011 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000534878 SDHAF2-005 protein_coding Homo_sapiens 0 457
ENST00000536250 SDHAF2-004 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000536670 RP11-286N22.8-004 retained_intron Homo_sapiens 0 457
ENST00000537782 SDHAF2-010 protein_coding Homo_sapiens 0 457
ENST00000538594 RP11-286N22.8-007 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000541135 RP11-286N22.8-003 protein_coding Homo_sapiens 0 457
ENST00000542074 SDHAF2-006 protein_coding Homo_sapiens 0 200
ENST00000542794 SDHAF2-003 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000543044 RP11-286N22.8-006 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000543265 SDHAF2-007 protein_coding Homo_sapiens 0 303
ENST00000544025 RP11-286N22.8-001 processed_transcript Homo_sapiens 0 457
ENST00000544801 RP11-286N22.8-002 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000544880 RP11-286N22.8-005 processed_transcript Homo_sapiens 0 457

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