C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: canopy 2 homolog (zebrafish)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026446 Cnpy2-201 ENSMUSG00000025381 10090 + 10:128322459-128327187 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026446
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026446 36.421±10.17 23.309±3.76 43.497±0.94 29.498±8.47 30.237±9.83 27.941±6.67 12.898±3.30 44.134±12.62 28.850±7.45 28.251±2.70 16.738±0.79 66.675±30.18 42.111±20.62 3.917±0.43

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0010629 IMP negative regulation of gene expression
GO:0010988 IMP regulation of low-density lipoprotein particle clearance
GO:0045716 IMP positive regulation of low-density lipoprotein particle receptor biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273308 CNPY2-001 protein_coding Homo_sapiens 0 1053
ENST00000546388 CNPY2-004 retained_intron Homo_sapiens 2.00386e-43 180
ENST00000546466 CNPY2-011 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000546937 CNPY2-003 retained_intron Homo_sapiens 0 558
ENST00000547423 RP11-977G19.10-002 protein_coding Homo_sapiens 0 431
ENST00000547570 CNPY2-006 retained_intron Homo_sapiens 0 326
ENST00000548013 CNPY2-002 retained_intron Homo_sapiens 0 436
ENST00000548360 RP11-977G19.10-003 protein_coding Homo_sapiens 0 431
ENST00000549318 RP11-977G19.10-001 protein_coding Homo_sapiens 0 811
ENST00000551276 CNPY2-009 processed_transcript Homo_sapiens 0 268
ENST00000551286 CNPY2-007 protein_coding Homo_sapiens 0 520
ENST00000551475 CNPY2-008 protein_coding Homo_sapiens 0 734
ENST00000551720 CNPY2-012 processed_transcript Homo_sapiens 0 488
ENST00000553164 CNPY2-005 retained_intron Homo_sapiens 0 327
ENST00000553191 CNPY2-010 nonsense_mediated_decay Homo_sapiens 0 556

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