C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026662 Cbx2-001 ENSMUSG00000025577 10090 + 11:119022962-119031270 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026662
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026662 1.143±0.55 0.857±0.31 0.955±0.09 7.126±6.44 1.008±0.43 0.893±0.21 0.437±0.07 0.912±0.27 1.401±0.31 0.650±0.07 0.342±0.05 3.937±1.27 5.746±3.15 0.709±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XJ CIL_0002XJ_0002 CGP 11:118988188-119031270
CIL_0002X9 CIL_0002X9_0002 CGP 11:119022962-119040969

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000791 IDA euchromatin
GO:0000792 IDA heterochromatin
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0031519 IDA PcG protein complex
GO:0035064 IDA methylated histone binding
GO:0035102 ISS PRC1 complex
GO:0045137 IEA development of primary sexual characteristics

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269399 CBX2-002 protein_coding Homo_sapiens 0 440
ENST00000310942 CBX2-001 protein_coding Homo_sapiens 0 1083
ENST00000571484 CBX2-003 retained_intron Homo_sapiens 0 311

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